Protein : Qrob_P0369420.2 Q. robur
Protein Identifier  ? Qrob_P0369420.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG0018//KOG0933//KOG0964//KOG0996 - Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin subunit SMC1) [Cell cycle control cell division chromosome partitioning]. // Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin subunit E) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning]. // Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin subunit SMC3) [Cell cycle control cell division chromosome partitioning]. // Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin subunit C) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 450  
Kegg Orthology  K06636
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0003682 chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
GO:0005694 chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO:0051276 chromosome organization A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.
GO:0007064 mitotic sister chromatid cohesion The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle. This cohesion cycle is critical for high fidelity chromosome transmission.
GO:0008278 cohesin complex A protein complex that is required for sister chromatid cohesion in eukaryotes. The cohesin complex forms a molecular ring complex, and is composed of structural maintenance of chromosomes (SMC) and kleisin proteins. For example, in yeast, the complex is composed of the SMC proteins Smc1p and Smc3p, and the kleisin protein Scc1p. In vertebrates, the complex is composed of the SMC1 (SMC1A or SMC1B) and SMC3 heterodimer attached via their hinge domains to a kleisin (RAD21, REC8 or RAD21L) which links them, and one STAG protein (STAG1, STAG2 or STAG3).

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_004030 10 443 + 434 Gaps:1 36.01 1208 78.62 0.0 Structural maintenance of chromosome 1 protein putative isoform 1
blastp_kegg lcl|cic:CICLE_v10024065mg 10 443 + 434 none 35.93 1208 76.50 0.0 hypothetical protein
blastp_kegg lcl|cit:102614736 10 443 + 434 Gaps:10 36.45 1218 75.00 0.0 structural maintenance of chromosomes protein 1-like
blastp_kegg lcl|cmo:103489726 10 443 + 434 Gaps:11 36.51 1219 74.61 0.0 structural maintenance of chromosomes protein 1
blastp_kegg lcl|pvu:PHAVU_007G1926001 10 439 + 430 Gaps:9 53.47 821 75.63 0.0 hypothetical protein
blastp_kegg lcl|csv:101204651 10 443 + 434 Gaps:29 37.43 1237 71.92 0.0 SMC1A structural maintenance of chromosomes 1A
blastp_kegg lcl|gmx:100785315 10 443 + 434 Gaps:10 36.48 1217 75.23 0.0 structural maintenance of chromosomes protein 1-like
blastp_kegg lcl|gmx:100791953 10 443 + 434 Gaps:10 36.48 1217 75.00 0.0 structural maintenance of chromosomes protein 1-like
blastp_kegg lcl|pop:POPTR_0005s24640g 10 443 + 434 Gaps:25 37.26 1232 74.07 0.0 POPTRDRAFT_559701 TITAN7 family protein
blastp_kegg lcl|cam:101500421 10 443 + 434 Gaps:10 36.45 1218 74.32 0.0 structural maintenance of chromosomes protein 1-like
blastp_pdb 2wd5_A 101 302 + 202 Gaps:15 91.42 233 44.60 4e-55 mol:protein length:233 STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN
blastp_pdb 3nwc_B 125 292 + 168 Gaps:13 88.36 189 35.93 1e-19 mol:protein length:189 SMC protein
blastp_pdb 3nwc_A 125 292 + 168 Gaps:13 88.36 189 35.93 1e-19 mol:protein length:189 SMC protein
blastp_pdb 3l51_B 145 275 + 131 Gaps:16 84.94 166 31.21 2e-11 mol:protein length:166 Structural maintenance of chromosomes protein
blastp_pdb 1gxl_D 113 308 + 196 Gaps:29 96.24 213 29.76 4e-07 mol:protein length:213 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_pdb 1gxl_C 113 308 + 196 Gaps:29 96.24 213 29.76 4e-07 mol:protein length:213 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_pdb 1gxl_B 113 308 + 196 Gaps:29 96.24 213 29.76 4e-07 mol:protein length:213 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_pdb 1gxl_A 113 308 + 196 Gaps:29 96.24 213 29.76 4e-07 mol:protein length:213 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_uniprot_sprot sp|Q6Q1P4|SMC1_ARATH 10 443 + 434 Gaps:10 36.45 1218 68.24 0.0 Structural maintenance of chromosomes protein 1 OS Arabidopsis thaliana GN SMC1 PE 2 SV 2
blastp_uniprot_sprot sp|O93308|SMC1A_XENLA 10 443 + 434 Gaps:28 36.20 1232 35.43 4e-74 Structural maintenance of chromosomes protein 1A OS Xenopus laevis GN smc1a PE 1 SV 1
blastp_uniprot_sprot sp|Q9CU62|SMC1A_MOUSE 10 443 + 434 Gaps:28 36.17 1233 34.98 1e-72 Structural maintenance of chromosomes protein 1A OS Mus musculus GN Smc1a PE 1 SV 4
blastp_uniprot_sprot sp|Q9Z1M9|SMC1A_RAT 10 443 + 434 Gaps:28 36.17 1233 34.98 1e-72 Structural maintenance of chromosomes protein 1A OS Rattus norvegicus GN Smc1a PE 1 SV 1
blastp_uniprot_sprot sp|O97593|SMC1A_BOVIN 10 443 + 434 Gaps:28 36.17 1233 34.98 1e-72 Structural maintenance of chromosomes protein 1A OS Bos taurus GN SMC1A PE 1 SV 1
blastp_uniprot_sprot sp|Q14683|SMC1A_HUMAN 10 443 + 434 Gaps:28 36.17 1233 34.98 2e-72 Structural maintenance of chromosomes protein 1A OS Homo sapiens GN SMC1A PE 1 SV 2
blastp_uniprot_sprot sp|Q920F6|SMC1B_MOUSE 24 443 + 420 Gaps:29 33.57 1248 31.03 1e-54 Structural maintenance of chromosomes protein 1B OS Mus musculus GN Smc1b PE 1 SV 1
blastp_uniprot_sprot sp|Q8NDV3|SMC1B_HUMAN 60 443 + 384 Gaps:30 33.20 1235 31.71 1e-53 Structural maintenance of chromosomes protein 1B OS Homo sapiens GN SMC1B PE 1 SV 2
blastp_uniprot_sprot sp|O94383|SMC1_SCHPO 53 443 + 391 Gaps:28 32.82 1228 31.76 1e-48 Structural maintenance of chromosomes protein 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN psm1 PE 1 SV 2
blastp_uniprot_sprot sp|P32908|SMC1_YEAST 42 413 + 372 Gaps:58 32.82 1225 29.85 7e-38 Structural maintenance of chromosomes protein 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SMC1 PE 1 SV 1
rpsblast_cdd gnl|CDD|162740 12 400 + 389 Gaps:42 36.00 1164 25.06 1e-31 TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
rpsblast_cdd gnl|CDD|31389 10 396 + 387 Gaps:27 35.43 1163 25.24 9e-28 COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 32 123 92 Coil none none none
SMART 144 250 107 SM00968 none SMC proteins Flexible Hinge Domain IPR010935
Coils 285 313 29 Coil none none none
Coils 326 368 43 Coil none none none
SUPERFAMILY 106 299 194 SSF75553 none none IPR010935
PANTHER 20 440 421 PTHR18937 none none none
PANTHER 20 440 421 PTHR18937:SF12 none none IPR028468
Pfam 144 248 105 PF06470 none SMC proteins Flexible Hinge Domain IPR010935

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting