Protein : Qrob_P0186130.2 Q. robur

Protein Identifier  ? Qrob_P0186130.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03660 - N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] Code Enzyme  EC:4.2.99.18
Gene Prediction Quality  validated Protein length 

Sequence

Length: 359  
Kegg Orthology  K03660

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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0006289 nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
GO:0003684 damaged DNA binding Interacting selectively and non-covalently with damaged DNA.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0006284 base-excision repair In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity Catalysis of the removal of oxidized purine bases by cleaving the N-C1' glycosidic bond between the oxidized purine and the deoxyribose sugar. The reaction involves the formation of a covalent enzyme-substrate intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apurinic (AP) site.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103319790 31 346 + 316 Gaps:6 85.33 375 83.44 0.0 N-glycosylase/DNA lyase OGG1
blastp_kegg lcl|mdm:103401722 2 357 + 356 Gaps:15 93.10 377 78.35 0.0 N-glycosylase/DNA lyase OGG1
blastp_kegg lcl|fve:101290717 35 357 + 323 Gaps:5 87.00 377 80.49 0.0 N-glycosylase/DNA lyase-like
blastp_kegg lcl|pper:PRUPE_ppa006280mg 31 344 + 314 Gaps:6 75.89 419 83.65 0.0 hypothetical protein
blastp_kegg lcl|pxb:103965525 2 357 + 356 Gaps:15 86.45 406 77.49 0.0 N-glycosylase/DNA lyase OGG1
blastp_kegg lcl|vvi:100264280 22 356 + 335 Gaps:13 86.72 399 75.43 0.0 N-glycosylase/DNA lyase-like
blastp_kegg lcl|tcc:TCM_035166 36 357 + 322 Gaps:1 88.43 363 77.57 0.0 8-oxoguanine DNA glycosylase putative isoform 1
blastp_kegg lcl|cic:CICLE_v10001657mg 39 357 + 319 Gaps:1 89.83 354 79.87 0.0 hypothetical protein
blastp_kegg lcl|cit:102614909 39 357 + 319 Gaps:1 89.83 354 79.25 0.0 N-glycosylase/DNA lyase OGG1-like
blastp_kegg lcl|cmo:103504082 20 356 + 337 Gaps:17 87.19 406 71.75 2e-177 N-glycosylase/DNA lyase OGG1
blastp_pdb 1ko9_A 25 358 + 334 Gaps:20 97.97 345 36.98 2e-63 mol:protein length:345 8-oxoguanine DNA glycosylase
blastp_pdb 1fn7_A 27 333 + 307 Gaps:15 99.05 317 37.26 3e-62 mol:protein length:317 8-OXOGUANINE DNA GLYCOSYLASE 1
blastp_pdb 1lwy_A 27 333 + 307 Gaps:15 96.91 324 37.26 4e-62 mol:protein length:324 8-OXOGUANINE DNA GLYCOSYLASE
blastp_pdb 1lww_A 27 333 + 307 Gaps:15 96.91 324 37.26 4e-62 mol:protein length:324 8-OXOGUANINE DNA GLYCOSYLASE
blastp_pdb 1lwv_A 27 333 + 307 Gaps:15 96.91 324 37.26 4e-62 mol:protein length:324 8-OXOGUANINE DNA GLYCOSYLASE
blastp_pdb 1hu0_A 27 333 + 307 Gaps:15 96.91 324 37.26 4e-62 mol:protein length:324 8-OXOGUANINE DNA GLYCOSYLASE 1
blastp_pdb 1ebm_A 27 333 + 307 Gaps:15 99.05 317 36.94 1e-61 mol:protein length:317 8-OXOGUANINE DNA GLYCOSYLASE
blastp_pdb 1n39_A 27 333 + 307 Gaps:15 99.05 317 36.94 1e-61 mol:protein length:317 N-glycosylase/DNA lyase
blastp_pdb 1m3q_A 27 333 + 307 Gaps:15 99.05 317 36.94 1e-61 mol:protein length:317 8-oxoguanine DNA glycosylase
blastp_pdb 1m3h_A 27 333 + 307 Gaps:15 99.05 317 36.94 1e-61 mol:protein length:317 8-Oxoguanine DNA Glycosylase
blastp_uniprot_sprot sp|Q9FNY7|OGG1_ARATH 1 340 + 340 Gaps:17 92.88 365 69.91 1e-161 N-glycosylase/DNA lyase OGG1 OS Arabidopsis thaliana GN OGG1 PE 1 SV 1
blastp_uniprot_sprot sp|O08760|OGG1_MOUSE 25 358 + 334 Gaps:22 97.97 345 39.05 4e-64 N-glycosylase/DNA lyase OS Mus musculus GN Ogg1 PE 2 SV 2
blastp_uniprot_sprot sp|O15527|OGG1_HUMAN 25 358 + 334 Gaps:20 97.97 345 36.98 8e-63 N-glycosylase/DNA lyase OS Homo sapiens GN OGG1 PE 1 SV 2
blastp_uniprot_sprot sp|O70249|OGG1_RAT 20 336 + 317 Gaps:14 94.20 345 37.85 2e-62 N-glycosylase/DNA lyase OS Rattus norvegicus GN Ogg1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9V3I8|OGG1_DROME 44 333 + 290 Gaps:16 86.30 343 36.49 2e-50 N-glycosylase/DNA lyase OS Drosophila melanogaster GN Ogg1 PE 2 SV 2
blastp_uniprot_sprot sp|P53397|OGG1_YEAST 40 333 + 294 Gaps:37 86.44 376 33.23 4e-42 N-glycosylase/DNA lyase OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN OGG1 PE 1 SV 1
blastp_uniprot_sprot sp|O27397|OGG1_METTH 137 329 + 193 Gaps:37 65.38 312 31.37 2e-15 Probable N-glycosylase/DNA lyase OS Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN MTH_1342 PE 3 SV 1
rpsblast_cdd gnl|CDD|211589 40 333 + 294 Gaps:10 97.42 310 37.75 2e-56 TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg). All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University). This family is distantly realted to the Nth-MutY superfamily.
rpsblast_cdd gnl|CDD|30471 102 329 + 228 Gaps:18 75.09 285 27.10 2e-28 COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|203810 43 155 + 113 none 100.00 113 36.28 7e-24 pfam07934 OGG_N 8-oxoguanine DNA glycosylase N-terminal domain. The presence of 8-oxoguanine residues in DNA can give rise to G-C to T-A transversion mutations. This enzyme is found in archaeal bacterial and eukaryotic species and is specifically responsible for the process which leads to the removal of 8-oxoguanine residues. It has DNA glycosylase activity (EC:3.2.2.23) and DNA lyase activity (EC:4.2.99.18). The region featured in this family is the N-terminal domain which is organised into a single copy of a TBP-like fold. The domain contributes residues to the 8-oxoguanine binding pocket.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 44 155 112 PF07934 none 8-oxoguanine DNA glycosylase, N-terminal domain IPR012904
SUPERFAMILY 150 331 182 SSF48150 "Reactome:REACT_216" none IPR011257
Gene3D 31 107 77 G3DSA:3.30.310.40 none none none
SMART 160 333 174 SM00478 "Reactome:REACT_216" endonuclease III IPR003265
PANTHER 41 357 317 PTHR10242:SF2 none none none
Gene3D 266 333 68 G3DSA:1.10.1670.10 none none IPR023170
SUPERFAMILY 31 149 119 SSF55945 none none none
Gene3D 150 265 116 G3DSA:1.10.340.30 "Reactome:REACT_216" none IPR011257
PANTHER 41 357 317 PTHR10242 none none none
Pfam 157 293 137 PF00730 "Reactome:REACT_216" HhH-GPD superfamily base excision DNA repair protein IPR003265

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting