Protein : Qrob_P0132020.2 Q. robur
Protein Identifier  ? Qrob_P0132020.2 Organism . Name  Quercus robur
Score  87.1 Score Type  egn
Protein Description  (M=2) PTHR10290 - DNA TOPOISOMERASE I Code Enzyme  EC:5.99.1.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 150  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO:0005694 chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO:0003917 DNA topoisomerase type I activity Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103424028 26 149 + 124 none 99.20 125 82.26 1e-67 DNA topoisomerase 1-like
blastp_kegg lcl|pmum:103344016 27 149 + 123 Gaps:1 17.13 724 87.10 2e-65 DNA topoisomerase 1-like
blastp_kegg lcl|pper:PRUPE_ppa001622mg 27 149 + 123 Gaps:1 15.70 790 86.29 7e-65 hypothetical protein
blastp_kegg lcl|tcc:TCM_030764 26 149 + 124 none 13.72 904 86.29 2e-64 DNA topoisomerase I alpha isoform 1
blastp_kegg lcl|mdm:103403811 26 149 + 124 none 14.00 886 83.87 3e-63 DNA topoisomerase 1-like
blastp_kegg lcl|pxb:103932126 26 149 + 124 none 14.03 884 83.87 3e-63 DNA topoisomerase 1-like
blastp_kegg lcl|pxb:103958524 26 149 + 124 none 14.03 884 83.87 3e-63 DNA topoisomerase 1-like
blastp_kegg lcl|pop:POPTR_0011s09520g 26 149 + 124 none 14.42 860 86.29 3e-63 POPTRDRAFT_234922 DNA topoisomerase family protein
blastp_kegg lcl|pxb:103943584 36 149 + 114 none 12.91 883 88.60 4e-63 DNA topoisomerase 1-like
blastp_kegg lcl|rcu:RCOM_0045870 34 149 + 116 none 13.02 891 88.79 3e-62 DNA topoisomerase type I putative (EC:1.3.1.74)
blastp_pdb 1rr8_C 39 149 + 111 Gaps:5 19.12 565 47.22 2e-21 mol:protein length:565 DNA topoisomerase I
blastp_pdb 1nh3_A 39 149 + 111 Gaps:5 19.18 563 47.22 2e-21 mol:protein length:563 DNA topoisomerase I
blastp_pdb 1a31_A 39 149 + 111 Gaps:5 18.27 591 47.22 2e-21 mol:protein length:591 PROTEIN (TOPOISOMERASE I)
blastp_pdb 1tl8_A 39 149 + 111 Gaps:5 18.24 592 47.22 2e-21 mol:protein length:592 DNA topoisomerase I
blastp_pdb 1t8i_A 39 149 + 111 Gaps:5 18.24 592 47.22 2e-21 mol:protein length:592 DNA topoisomerase I
blastp_pdb 1sc7_A 39 149 + 111 Gaps:5 18.24 592 47.22 2e-21 mol:protein length:592 DNA topoisomerase I
blastp_pdb 1k4t_A 39 149 + 111 Gaps:5 18.24 592 47.22 2e-21 mol:protein length:592 DNA topoisomerase I
blastp_pdb 1k4s_A 39 149 + 111 Gaps:5 18.24 592 47.22 2e-21 mol:protein length:592 DNA topoisomerase I
blastp_pdb 1lpq_A 39 149 + 111 Gaps:5 19.15 564 46.30 8e-21 mol:protein length:564 DNA topoisomerase I
blastp_pdb 1ej9_A 39 149 + 111 Gaps:5 19.18 563 46.30 8e-21 mol:protein length:563 DNA TOPOISOMERASE I
blastp_uniprot_sprot sp|P30181|TOP1_ARATH 28 149 + 122 none 13.32 916 75.41 3e-54 DNA topoisomerase 1 OS Arabidopsis thaliana GN TOP1 PE 1 SV 1
blastp_uniprot_sprot sp|P93119|TOP1_DAUCA 34 149 + 116 Gaps:22 17.47 790 66.67 2e-49 DNA topoisomerase 1 OS Daucus carota GN TOP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q54RC3|TOP1_DICDI 56 149 + 94 Gaps:10 9.41 893 61.90 4e-21 DNA topoisomerase 1 OS Dictyostelium discoideum GN top1 PE 3 SV 1
blastp_uniprot_sprot sp|P30189|TOP1_DROME 74 149 + 76 Gaps:1 7.92 972 53.25 1e-20 DNA topoisomerase 1 OS Drosophila melanogaster GN Top1 PE 1 SV 1
blastp_uniprot_sprot sp|Q04750|TOP1_MOUSE 39 149 + 111 Gaps:5 14.08 767 47.22 2e-20 DNA topoisomerase 1 OS Mus musculus GN Top1 PE 1 SV 2
blastp_uniprot_sprot sp|Q7YR26|TOP1_CHLAE 39 149 + 111 Gaps:5 14.08 767 47.22 2e-20 DNA topoisomerase 1 OS Chlorocebus aethiops GN TOP1 PE 2 SV 1
blastp_uniprot_sprot sp|P11387|TOP1_HUMAN 39 149 + 111 Gaps:5 14.12 765 47.22 2e-20 DNA topoisomerase 1 OS Homo sapiens GN TOP1 PE 1 SV 2
blastp_uniprot_sprot sp|Q07050|TOP1_CRIGR 39 149 + 111 Gaps:5 14.08 767 47.22 2e-20 DNA topoisomerase 1 OS Cricetulus griseus GN TOP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9WUL0|TOP1_RAT 39 149 + 111 Gaps:5 14.08 767 47.22 2e-20 DNA topoisomerase 1 OS Rattus norvegicus GN Top1 PE 2 SV 1
blastp_uniprot_sprot sp|P07799|TOP1_SCHPO 70 149 + 80 none 9.83 814 47.50 1e-17 DNA topoisomerase 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN top1 PE 1 SV 2

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 80 149 70 PF14370 none C-terminal topoisomerase domain IPR025834
ProSitePatterns 95 113 19 PS00176 none Eukaryotic DNA topoisomerase I active site. IPR018521
SMART 7 122 116 SM00435 none DNA Topoisomerase I (eukaryota) IPR013499
Coils 76 97 22 Coil none none none
PANTHER 33 149 117 PTHR10290 none none none
SUPERFAMILY 95 147 53 SSF56349 none none IPR011010
PANTHER 33 149 117 PTHR10290:SF3 none none none
Gene3D 31 149 119 G3DSA:1.10.132.10 none none IPR014727

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting