Protein : Qrob_P0039830.2 Q. robur
Protein Identifier  ? Qrob_P0039830.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0018//KOG0161//KOG0243//KOG0612//KOG0933//KOG0962//KOG0964//KOG0976//KOG0996//KOG1029 - Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin subunit SMC1) [Cell cycle control cell division chromosome partitioning]. // Myosin class II heavy chain [Cytoskeleton]. // Kinesin-like protein [Cytoskeleton]. // Rho-associated coiled-coil containing protein kinase [Signal transduction mechanisms]. // Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin subunit E) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning]. // DNA repair protein RAD50 ABC-type ATPase/SMC superfamily [Replication recombination and repair]. // Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin subunit SMC3) [Cell cycle control cell division chromosome partitioning]. // Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]. // Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin subunit C) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning]. // Endocytic adaptor protein intersectin [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1199  
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0 Synonyms

0 GO Terms

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000415mg 1 1198 + 1198 Gaps:33 99.92 1198 61.65 0.0 hypothetical protein
blastp_kegg lcl|pmum:103341418 1 1198 + 1198 Gaps:34 99.92 1197 61.37 0.0 putative nuclear matrix constituent protein 1-like protein
blastp_kegg lcl|mdm:103423761 1 1198 + 1198 Gaps:40 99.92 1217 59.05 0.0 putative nuclear matrix constituent protein 1-like protein
blastp_kegg lcl|pxb:103929210 1 1198 + 1198 Gaps:40 99.92 1217 58.96 0.0 putative nuclear matrix constituent protein 1-like protein
blastp_kegg lcl|cit:102617982 1 1198 + 1198 Gaps:72 100.00 1222 58.76 0.0 putative nuclear matrix constituent protein 1-like protein-like
blastp_kegg lcl|vvi:100242259 1 1198 + 1198 Gaps:71 100.00 1213 62.16 0.0 putative nuclear matrix constituent protein 1-like protein-like
blastp_kegg lcl|cic:CICLE_v10030538mg 1 1198 + 1198 Gaps:72 100.00 1222 58.67 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_011885 1 1198 + 1198 Gaps:64 100.00 1198 57.85 0.0 Nuclear matrix constituent protein-related putative isoform 1
blastp_kegg lcl|mdm:103402733 1 1198 + 1198 Gaps:45 100.00 1217 57.93 0.0 putative nuclear matrix constituent protein 1-like protein
blastp_kegg lcl|pop:POPTR_0008s11380g 19 1198 + 1180 Gaps:52 99.42 1205 56.51 0.0 POPTRDRAFT_766006 POPTRDRAFT_766007 hypothetical protein
blastp_uniprot_sprot sp|Q9FLH0|NMCP_ARATH 58 835 + 778 Gaps:58 78.69 1042 32.07 7e-80 Putative nuclear matrix constituent protein 1-like protein OS Arabidopsis thaliana GN At5g65770 PE 2 SV 1
blastp_uniprot_sprot sp|Q21313|EPI1_CAEEL 160 646 + 487 Gaps:86 12.99 3672 23.48 4e-11 Laminin-like protein epi-1 OS Caenorhabditis elegans GN epi-1 PE 1 SV 1
rpsblast_cdd gnl|CDD|173412 104 757 + 654 Gaps:229 37.52 2084 56.01 2e-16 PTZ00121 PTZ00121 MAEBL Provisional.
rpsblast_cdd gnl|CDD|31389 59 785 + 727 Gaps:328 74.89 1163 71.30 2e-15 COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning].
rpsblast_cdd gnl|CDD|179675 195 740 + 546 Gaps:64 62.73 880 32.07 3e-15 PRK03918 PRK03918 chromosome segregation protein Provisional.
rpsblast_cdd gnl|CDD|162739 102 760 + 659 Gaps:196 74.98 1179 38.80 1e-13 TIGR02168 SMC_prok_B chromosome segregation protein SMC common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
rpsblast_cdd gnl|CDD|179385 103 703 + 601 Gaps:130 65.34 880 37.91 4e-12 PRK02224 PRK02224 chromosome segregation protein Provisional.
rpsblast_cdd gnl|CDD|30768 59 757 + 699 Gaps:155 67.62 908 62.21 9e-12 COG0419 SbcC ATPase involved in DNA repair [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162740 75 756 + 682 Gaps:338 60.74 1164 65.49 2e-11 TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
rpsblast_cdd gnl|CDD|202246 56 767 + 712 Gaps:38 74.61 1162 33.56 7e-11 pfam02463 SMC_N RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
rpsblast_cdd gnl|CDD|204830 53 751 + 699 Gaps:185 64.61 1198 27.00 1e-10 pfam12128 DUF3584 Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
rpsblast_cdd gnl|CDD|129705 108 734 + 627 Gaps:57 64.11 1042 14.82 2e-10 TIGR00618 sbcc exonuclease SbcC. All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University).
rpsblast_kog gnl|CDD|35383 73 751 + 679 Gaps:379 56.42 1930 59.32 3e-25 KOG0161 KOG0161 KOG0161 Myosin class II heavy chain [Cytoskeleton].
rpsblast_kog gnl|CDD|36180 54 769 + 716 Gaps:164 70.40 1294 34.03 3e-15 KOG0962 KOG0962 KOG0962 DNA repair protein RAD50 ABC-type ATPase/SMC superfamily [Replication recombination and repair].
rpsblast_kog gnl|CDD|36214 109 670 + 562 Gaps:81 55.22 1293 27.87 2e-12 KOG0996 KOG0996 KOG0996 Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin subunit C) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|35832 104 740 + 637 Gaps:99 47.91 1317 31.54 3e-12 KOG0612 KOG0612 KOG0612 Rho-associated coiled-coil containing protein kinase [Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36182 317 714 + 398 Gaps:32 28.83 1200 34.97 1e-11 KOG0964 KOG0964 KOG0964 Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin subunit SMC3) [Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|36247 198 769 + 572 Gaps:149 34.08 1118 47.51 1e-11 KOG1029 KOG1029 KOG1029 Endocytic adaptor protein intersectin [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|35241 299 754 + 456 Gaps:58 48.99 1141 23.08 1e-11 KOG0018 KOG0018 KOG0018 Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin subunit SMC1) [Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|36194 110 742 + 633 Gaps:80 55.57 1265 27.60 4e-11 KOG0976 KOG0976 KOG0976 Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms].

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 105 133 29 Coil none none none
Coils 253 274 22 Coil none none none
Coils 629 749 121 Coil none none none
Coils 158 179 22 Coil none none none
Phobius 1 22 22 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 8 16 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Coils 518 595 78 Coil none none none
Coils 337 365 29 Coil none none none
Coils 957 978 22 Coil none none none
Phobius 1 7 7 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 17 22 6 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 23 1198 1176 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Coils 385 511 127 Coil none none none
Coils 70 91 22 Coil none none none
Coils 197 239 43 Coil none none none
PANTHER 11 1185 1175 PTHR31908 none none none
Coils 281 323 43 Coil none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 19   Mitochondrion 2 0.052 0.812 NON-PLANT 19