Blast Analysis : gnl|CDD|162740

Analysis  rpsblast_cdd Start  75
End  756 Strand  +
Length  682 Note  Gaps:338
Hit Coverage  60.74 Hit Length  1164
Hit Pident  65.49 E Val  2e-11
Hit Description  TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent. Hit Pcons  23.20
Name  Qrob_P0039830.2
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1 Protein

Protein Identifier
Organism . Name 		Score Score Type Protein Description Alias (in v1) Code Enzyme Gene Prediction Quality
Qrob_P0039830.2 Quercus robur 100.0 egn (M=1) KOG0018//KOG0161//KOG0243//KOG0612//KOG0933//KOG0962//KOG0964//KOG0976//KOG0996//KOG1029 - Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin subunit SMC1) [Cell cycle control cell division chromosome partitioning]. // Myosin class II heavy chain [Cytoskeleton]. // Kinesin-like protein [Cytoskeleton]. // Rho-associated coiled-coil containing protein kinase [Signal transduction mechanisms]. // Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin subunit E) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning]. // DNA repair protein RAD50 ABC-type ATPase/SMC superfamily [Replication recombination and repair]. // Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin subunit SMC3) [Cell cycle control cell division chromosome partitioning]. // Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]. // Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin subunit C) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning]. // Endocytic adaptor protein intersectin [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport].     validated