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Genome sequences and databases

Access restricted to FungiSex project consortium

  • Preliminary analysis have been performed and available for the first draft of   Microbotryum violaceum sp. slatifolia sexual chromosomes A1, A2 assemblies
     Sequences are available in Blast, Retrieve and annotations available through GnpGenome

 

  • BLAST ( How_to_Launch_Blast_in_SRS.pdf 538.71 kB) and Retrieve sequences : Available blasts are: blastn, tblastn,blastp
     - 397 Supercontigs from M.violaceum sp. slatifolia sexual chromosomes A1, A2
     - 24128 EST (7765 unisequences) ) previously sequenced and avalable at FunyEST

     

  • GnpGenome : a Genome Browser for Structural annotation : A database based on the chado model (GMOD) gathers all the information produced the structural annotation   M.violaceum sp. slatifolia sexual chromosomes A1, A2  assemblies.
    • Prediction pipeline has been processed through Fgenesh (ab initio gene finding software using Botrytis parameters)
    • Protein mapping from Uniprot
    • ESTs from M. violaceum
    • Mapping with the second version of assembly including M. Hood sequences
       
Update: 13 Aug 2015
Creation date: 11 Jan 2011