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PlantSyntenyViewer

Plant Synteny viewer is a project coordinated at scientific level by Jerome Salse INRA GDEC, funded by INRA GAP departement whose goal is to develop a graphical tool to display and to navigate between genes in ancestral chromosome and modern chromosomes. URGI is in charge of software development.

Duration: 01/01/2011 to 31/12/2011

Coordinator: Jerome Salse, Delphine Steinbach

Partner INRA GDEC Clermont-Ferrand : Jerome Salse

 Role: scientific project manager

 

Partner INRA URGI Platform:

 - software developper : Raphael Flores

 - project URGI coordination : Delphine Steinbach

Results:

  • The development of this new tool, Plant Synteny Viewer, guided by J. Salse needs, is now closed.
  • The tool was used with real data given by J. Salse's team at INRA Clermont Ferrand. It is open for query for project partners with a login account
  • A paper is in prep. in 2013, to present these data and the tools.
  • The tool will be publicly available for query, on the URGI Web site, as soon as the publication will be accepted.
  • A first demo of this tool was done at IJPB Versailles, in 2013 to french barley community

For interest in this tool, please contact Jerome Salse at clermont inra fr and Delphine Steinbach and Raphael Flores at versailles inra fr. 

 

Publication:

WHEAT SYNTENOME UNVEILS NEW EVIDENCES OF CONTRASTED EVOLUTIONARY PLASTICITY BETWEEN PALEO- AND NEODUPLICATED SUBGENOMES

Pont, Caroline; Murat, Florent; Guizard, Sebastien; Flores, Raphael; Foucrier, Severine; Bidet, Yannick; Quraishi, Umar Massod; Alaux, Michael; Dolezel, Jaroslav; Fahima, Tzion; Budak, Hikmet; Keller, Beat; Salvi, Silvio; Maccaferri, Marco; Steinbach, Delphine; Feuillet, Catherine; Quesneville, Hadi; Salse, Jerome

The Plant Journal, in press

 

Launch Plant Synteny Viewer:

Wheat synteny viewer

Update: 16 Oct 2013
Creation date: 07 Dec 2011
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