Protein : Qrob_P0737960.2 Q. robur

Protein Identifier  ? Qrob_P0737960.2 Organism . Name  Quercus robur
Score  95.1 Score Type  egn
Protein Description  (M=2) K10846 - DNA excision repair protein ERCC-5 Code Enzyme  EC:3.1.11.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1748  
Kegg Orthology  K10846

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0 Synonyms

9 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006289 nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0004518 nuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO:0016788 hydrolase activity, acting on ester bonds Catalysis of the hydrolysis of any ester bond.
GO:0004519 endonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
GO:0003697 single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103329892 1 1747 + 1747 Gaps:168 100.00 1681 58.95 0.0 DNA repair protein UVH3
blastp_kegg lcl|mdm:103404581 1 1747 + 1747 Gaps:212 100.00 1593 59.45 0.0 DNA repair protein UVH3
blastp_kegg lcl|cit:102606724 1 1747 + 1747 Gaps:170 100.00 1699 57.62 0.0 DNA repair protein UVH3-like
blastp_kegg lcl|cic:CICLE_v10014025mg 1 1747 + 1747 Gaps:170 100.00 1699 57.33 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0851780 1 1745 + 1745 Gaps:163 99.94 1641 56.65 0.0 DNA-repair protein UVH3 putative
blastp_kegg lcl|tcc:TCM_016845 1 1746 + 1746 Gaps:195 99.94 1670 56.38 0.0 DNA-repair protein UVH3 putative isoform 1
blastp_kegg lcl|fve:101313912 1 1745 + 1745 Gaps:185 99.94 1637 55.93 0.0 uncharacterized protein LOC101313912
blastp_kegg lcl|gmx:100820295 1 1745 + 1745 Gaps:175 99.94 1701 54.76 0.0 DNA repair protein UVH3-like
blastp_kegg lcl|pvu:PHAVU_008G152600g 1 1746 + 1746 Gaps:169 100.00 1691 52.28 0.0 hypothetical protein
blastp_kegg lcl|cam:101493619 1 1746 + 1746 Gaps:243 100.00 1667 52.37 0.0 DNA repair protein UVH3-like
blastp_pdb 1b43_B 11 1152 + 1142 Gaps:30 70.29 340 37.66 2e-18 mol:protein length:340 PROTEIN (FEN-1)
blastp_pdb 1b43_A 11 1152 + 1142 Gaps:30 70.29 340 37.66 2e-18 mol:protein length:340 PROTEIN (FEN-1)
blastp_pdb 1mc8_B 11 1151 + 1141 Gaps:26 75.80 343 37.31 7e-18 mol:protein length:343 Flap Endonuclease-1
blastp_pdb 1mc8_A 11 1151 + 1141 Gaps:26 75.80 343 37.31 7e-18 mol:protein length:343 Flap Endonuclease-1
blastp_pdb 1a77_A 17 1153 + 1137 Gaps:7 73.93 326 34.02 3e-16 mol:protein length:326 FLAP ENDONUCLEASE-1 PROTEIN
blastp_pdb 1a76_A 17 1153 + 1137 Gaps:7 73.93 326 34.02 3e-16 mol:protein length:326 FLAP ENDONUCLEASE-1 PROTEIN
blastp_pdb 1ul1_Z 2 1139 + 1138 Gaps:14 57.78 379 34.70 5e-16 mol:protein length:379 Flap endonuclease-1
blastp_pdb 1ul1_Y 2 1139 + 1138 Gaps:14 57.78 379 34.70 5e-16 mol:protein length:379 Flap endonuclease-1
blastp_pdb 1ul1_X 2 1139 + 1138 Gaps:14 57.78 379 34.70 5e-16 mol:protein length:379 Flap endonuclease-1
blastp_pdb 3q8l_A 2 1149 + 1148 Gaps:30 71.85 341 33.47 1e-15 mol:protein length:341 Flap endonuclease 1
blastp_uniprot_sprot sp|Q9ATY5|UVH3_ARATH 1 1634 + 1634 Gaps:227 95.27 1479 54.79 0.0 DNA repair protein UVH3 OS Arabidopsis thaliana GN UVH3 PE 2 SV 1
blastp_uniprot_sprot sp|P14629|ERCC5_XENLA 1 1357 + 1357 Gaps:3 29.18 1196 51.29 5e-42 DNA repair protein complementing XP-G cells homolog OS Xenopus laevis GN ercc5 PE 2 SV 1
blastp_uniprot_sprot sp|P28706|RAD13_SCHPO 1 1366 + 1366 Gaps:21 37.14 1112 46.49 6e-42 DNA repair protein rad13 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rad13 PE 2 SV 2
blastp_uniprot_sprot sp|P35689|ERCC5_MOUSE 1 1429 + 1429 Gaps:56 37.61 1170 47.73 1e-41 DNA repair protein complementing XP-G cells homolog OS Mus musculus GN Ercc5 PE 1 SV 4
blastp_uniprot_sprot sp|P28715|ERCC5_HUMAN 1 1357 + 1357 Gaps:6 31.03 1186 48.37 1e-40 DNA repair protein complementing XP-G cells OS Homo sapiens GN ERCC5 PE 1 SV 3
blastp_uniprot_sprot sp|P07276|RAD2_YEAST 1 1325 + 1325 Gaps:15 36.95 1031 45.93 2e-38 DNA repair protein RAD2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RAD2 PE 1 SV 2
blastp_uniprot_sprot sp|Q8BMI4|GEN_MOUSE 1 1157 + 1157 Gaps:9 25.77 908 38.89 6e-26 Flap endonuclease GEN homolog 1 OS Mus musculus GN Gen1 PE 2 SV 2
blastp_uniprot_sprot sp|Q17RS7|GEN_HUMAN 1 1179 + 1179 Gaps:11 27.75 908 36.11 5e-24 Flap endonuclease GEN homolog 1 OS Homo sapiens GN GEN1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8W5R1|GENL2_ORYSJ 1 1140 + 1140 Gaps:4 33.70 641 43.52 4e-23 Flap endonuclease GEN-like 2 OS Oryza sativa subsp. japonica GN SEND1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LPD2|GENL1_ARATH 1 1323 + 1323 Gaps:54 63.77 599 34.55 6e-22 Flap endonuclease GEN-like 1 OS Arabidopsis thaliana GN GEN1 PE 2 SV 3

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 72 91 20 PR00853 none Xeroderma pigmentosum group G/yeast RAD superfamily signature IPR006084
PRINTS 24 38 15 PR00853 none Xeroderma pigmentosum group G/yeast RAD superfamily signature IPR006084
Pfam 1039 1121 83 PF00867 none XPG I-region IPR006086
Coils 993 1028 36 Coil none none none
Gene3D 1106 1155 50 G3DSA:1.10.150.20 none none none
PANTHER 1264 1431 168 PTHR11081 none none IPR006084
PANTHER 2 106 105 PTHR11081 none none IPR006084
SUPERFAMILY 1004 1121 118 SSF88723 none none IPR029060
SUPERFAMILY 2 103 102 SSF88723 none none IPR029060
PANTHER 990 1162 173 PTHR11081 none none IPR006084
Gene3D 1 116 116 G3DSA:3.40.50.1010 none none IPR029060
Gene3D 1017 1105 89 G3DSA:3.40.50.1010 none none IPR029060
ProSitePatterns 70 84 15 PS00841 none XPG protein signature 1. IPR019974
ProSitePatterns 1040 1054 15 PS00842 none XPG protein signature 2. IPR019974
PANTHER 990 1162 173 PTHR11081:SF1 none none IPR001044
PANTHER 1264 1431 168 PTHR11081:SF1 none none IPR001044
Pfam 1 97 97 PF00752 none XPG N-terminal domain IPR006085
SMART 1 98 98 SM00485 none Xeroderma pigmentosum G N-region IPR006085
PRINTS 222 247 26 PR00066 none Xeroderma pigmentosum group G protein signature IPR001044
PRINTS 96 118 23 PR00066 none Xeroderma pigmentosum group G protein signature IPR001044
PRINTS 54 77 24 PR00066 none Xeroderma pigmentosum group G protein signature IPR001044
PRINTS 2 19 18 PR00066 none Xeroderma pigmentosum group G protein signature IPR001044
SMART 1108 1141 34 SM00279 none Helix-hairpin-helix class 2 (Pol1 family) motifs IPR008918
Coils 116 137 22 Coil none none none
PANTHER 2 106 105 PTHR11081:SF1 none none IPR001044
SUPERFAMILY 1261 1347 87 SSF47807 none none IPR020045
SUPERFAMILY 1106 1153 48 SSF47807 none none IPR020045
SMART 1037 1106 70 SM00484 none Xeroderma pigmentosum G I-region IPR006086

0 Localization

0 Qtllist

0 Targeting