Protein : Qrob_P0731580.2 Q. robur
Protein Identifier  ? Qrob_P0731580.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K12951 - cation-transporting P-type ATPase D [EC:3.6.3.-] Code Enzyme  EC:3.1.13.5
Gene Prediction Quality  validated Protein length 

Sequence

Length: 933  
Kegg Orthology  K12951
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0044237 cellular metabolic process The chemical reactions and pathways by which individual cells transform chemical substances.
GO:0006139 nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0008408 3'-5' exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103329380 1 928 + 928 Gaps:48 99.48 965 66.98 0.0 uncharacterized LOC103329380
blastp_kegg lcl|pper:PRUPE_ppa024996mg 1 931 + 931 Gaps:54 99.78 923 67.75 0.0 hypothetical protein
blastp_kegg lcl|mdm:103442609 7 928 + 922 Gaps:42 98.84 949 65.46 0.0 uncharacterized LOC103442609
blastp_kegg lcl|pxb:103944539 7 928 + 922 Gaps:52 98.85 959 64.87 0.0 uncharacterized LOC103944539
blastp_kegg lcl|fve:101292630 1 928 + 928 Gaps:55 99.78 923 65.36 0.0 uncharacterized protein LOC101292630
blastp_kegg lcl|tcc:TCM_011364 6 925 + 920 Gaps:46 99.06 959 64.00 0.0 3'-5' exonuclease putative
blastp_kegg lcl|cit:102608683 1 927 + 927 Gaps:51 98.73 944 63.73 0.0 uncharacterized LOC102608683
blastp_kegg lcl|rcu:RCOM_0487950 1 928 + 928 Gaps:70 99.69 977 62.42 0.0 3'-5' exonuclease putative
blastp_kegg lcl|cmo:103495596 1 927 + 927 Gaps:92 99.21 884 68.07 0.0 uncharacterized LOC103495596
blastp_kegg lcl|pop:POPTR_0012s06300g 1 928 + 928 Gaps:69 99.68 930 65.16 0.0 hypothetical protein
blastp_pdb 3sag_B 83 404 + 322 Gaps:35 72.20 428 39.16 4e-52 mol:protein length:428 Exosome component 10
blastp_pdb 3sag_A 83 404 + 322 Gaps:35 72.20 428 39.16 4e-52 mol:protein length:428 Exosome component 10
blastp_pdb 3saf_B 83 404 + 322 Gaps:35 72.20 428 39.16 4e-52 mol:protein length:428 Exosome component 10
blastp_pdb 3saf_A 83 404 + 322 Gaps:35 72.20 428 39.16 4e-52 mol:protein length:428 Exosome component 10
blastp_pdb 3sah_B 83 404 + 322 Gaps:35 72.20 428 39.16 2e-51 mol:protein length:428 Exosome component 10
blastp_pdb 3sah_A 83 404 + 322 Gaps:35 72.20 428 39.16 2e-51 mol:protein length:428 Exosome component 10
blastp_pdb 2hbm_A 53 405 + 353 Gaps:32 87.56 410 35.93 2e-51 mol:protein length:410 Exosome complex exonuclease RRP6
blastp_pdb 2hbl_A 53 405 + 353 Gaps:32 87.56 410 35.93 2e-51 mol:protein length:410 Exosome complex exonuclease RRP6
blastp_pdb 2hbk_A 53 405 + 353 Gaps:32 87.56 410 35.93 2e-51 mol:protein length:410 Exosome complex exonuclease RRP6
blastp_pdb 2hbj_A 53 405 + 353 Gaps:32 87.56 410 35.93 2e-51 mol:protein length:410 Exosome complex exonuclease RRP6
blastp_uniprot_sprot sp|P56960|EXOSX_MOUSE 83 404 + 322 Gaps:35 34.84 887 40.45 2e-51 Exosome component 10 OS Mus musculus GN Exosc10 PE 1 SV 2
blastp_uniprot_sprot sp|Q12149|RRP6_YEAST 53 405 + 353 Gaps:32 48.98 733 36.21 2e-50 Exosome complex exonuclease RRP6 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RRP6 PE 1 SV 1
blastp_uniprot_sprot sp|Q01780|EXOSX_HUMAN 83 404 + 322 Gaps:35 34.92 885 39.48 2e-50 Exosome component 10 OS Homo sapiens GN EXOSC10 PE 1 SV 2
blastp_uniprot_sprot sp|Q10146|RRP6_SCHPO 83 439 + 357 Gaps:25 42.99 777 37.13 5e-50 Exosome complex exonuclease rrp6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rrp6 PE 3 SV 2
blastp_uniprot_sprot sp|Q9NVH0|EXD2_HUMAN 519 703 + 185 Gaps:18 26.89 621 38.92 6e-28 Exonuclease 3'-5' domain-containing protein 2 OS Homo sapiens GN EXD2 PE 1 SV 2
blastp_uniprot_sprot sp|Q8VEG4|EXD2_MOUSE 519 703 + 185 Gaps:18 33.67 496 39.52 1e-27 Exonuclease 3'-5' domain-containing protein 2 OS Mus musculus GN Exd2 PE 2 SV 1
blastp_uniprot_sprot sp|P09155|RND_ECOLI 121 319 + 199 Gaps:20 57.87 375 26.73 9e-13 Ribonuclease D OS Escherichia coli (strain K12) GN rnd PE 1 SV 1
blastp_uniprot_sprot sp|A7HYE5|RND_PARL1 124 400 + 277 Gaps:28 65.89 384 28.46 1e-11 Ribonuclease D OS Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN rnd PE 3 SV 2
blastp_uniprot_sprot sp|A9H9B7|RND_GLUDA 124 394 + 271 Gaps:26 62.85 393 27.13 6e-11 Ribonuclease D OS Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN rnd PE 3 SV 1
blastp_uniprot_sprot sp|P44442|RND_HAEIN 124 400 + 277 Gaps:26 63.91 399 27.45 8e-11 Ribonuclease D OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN rnd PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 726 726 PTHR12124:SF41 none none none
Gene3D 119 292 174 G3DSA:3.30.420.10 none none IPR012337
SUPERFAMILY 54 316 263 SSF53098 none none IPR012337
SMART 121 289 169 SM00474 none 3'-5' exonuclease IPR002562
Phobius 1 8 8 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 726 726 PTHR12124 none none none
Pfam 121 288 168 PF01612 none 3'-5' exonuclease IPR002562
SUPERFAMILY 353 454 102 SSF47819 none none IPR010997
ProSiteProfiles 352 432 81 PS50967 none HRDC domain profile. IPR002121
Phobius 29 932 904 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 357 401 45 PF00570 none HRDC domain IPR002121
Phobius 9 28 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 7 26 19

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting