Protein : Qrob_P0665840.2 Q. robur
Protein Identifier  ? Qrob_P0665840.2 Organism . Name  Quercus robur
Score  96.2 Score Type  egn
Protein Description  (M=2) PTHR30071 - HEME EXPORTER PROTEIN C Gene Prediction Quality  validated
Protein length 

Sequence

Length: 251  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0020037 heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
GO:0017004 cytochrome complex assembly The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions.
GO:0015232 heme transporter activity Enables the directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of or within a cell, or between cells.
GO:0015886 heme transport The directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:13630203 1 250 + 250 none 100.00 250 94.40 8e-165 ccmC C3258_p31 ccmC
blastp_kegg lcl|ath:ArthMp079 1 243 + 243 none 94.92 256 93.00 1e-156 ccb256 cytochrome c biogenesis orf256
blastp_kegg lcl|ath:AT2G07771 1 243 + 243 none 94.92 256 93.00 1e-156 Cytochrome C assembly protein
blastp_kegg lcl|vvi:7498513 1 250 + 250 none 100.00 250 89.60 5e-154 ccmC ViviM_p055 cytochrome c biogenesis C
blastp_kegg lcl|rcu:RCOM_Mp19 1 232 + 232 none 100.00 232 94.83 3e-151 ccmC cytochrome c biogenesis C
blastp_kegg lcl|gmx:15308539 1 245 + 245 none 99.59 246 90.61 1e-150 ccmC GlmaxMp01 cytochrome c biogenesis C
blastp_kegg lcl|cam:101509725 1 235 + 235 none 100.00 235 91.06 1e-146 putative cytochrome c biosynthesis ccmC-like mitochondrial protein-like
blastp_kegg lcl|cam:101490171 1 235 + 235 none 100.00 235 91.06 1e-146 putative cytochrome c biosynthesis ccmC-like mitochondrial protein-like
blastp_kegg lcl|csv:11123883 1 232 + 232 none 93.93 247 92.24 5e-146 ccmC CusaM_p24 cytochrome c biogenesis C
blastp_kegg lcl|csv:101219694 1 232 + 232 none 93.93 247 92.24 5e-146 putative cytochrome c biosynthesis ccmC-like mitochondrial protein-like
blastp_uniprot_sprot sp|P92527|CCMC_ARATH 1 232 + 232 none 100.00 232 85.34 8e-133 Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS Arabidopsis thaliana GN CCMC PE 2 SV 4
blastp_uniprot_sprot sp|P38453|CCMC_MARPO 1 221 + 221 none 96.93 228 65.61 7e-93 Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS Marchantia polymorpha GN CCMC PE 3 SV 1
blastp_uniprot_sprot sp|P30962|CCMC_BRADU 3 196 + 194 Gaps:8 76.05 263 39.50 9e-36 Heme exporter protein C OS Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN cycZ PE 3 SV 1
blastp_uniprot_sprot sp|P45034|CCMC_HAEIN 27 196 + 170 Gaps:7 71.95 246 40.11 9e-30 Heme exporter protein C OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN ccmC PE 3 SV 1
blastp_uniprot_sprot sp|P0ABM4|CCMC_SHIFL 41 235 + 195 Gaps:9 81.63 245 36.00 1e-27 Heme exporter protein C OS Shigella flexneri GN ccmC PE 3 SV 1
blastp_uniprot_sprot sp|P0ABM1|CCMC_ECOLI 41 235 + 195 Gaps:9 81.63 245 36.00 1e-27 Heme exporter protein C OS Escherichia coli (strain K12) GN ccmC PE 1 SV 1
blastp_uniprot_sprot sp|P0ABM2|CCMC_ECOL6 41 235 + 195 Gaps:9 81.63 245 36.00 1e-27 Heme exporter protein C OS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN ccmC PE 3 SV 1
blastp_uniprot_sprot sp|P0ABM3|CCMC_ECO57 41 235 + 195 Gaps:9 81.63 245 36.00 1e-27 Heme exporter protein C OS Escherichia coli O157:H7 GN ccmC PE 3 SV 1
blastp_uniprot_sprot sp|Q9I3N5|CCMC_PSEAE 37 196 + 160 Gaps:7 66.27 252 34.73 7e-26 Heme exporter protein C OS Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN ccmC PE 3 SV 1
blastp_uniprot_sprot sp|P52220|CCMC_PARDP 42 183 + 142 Gaps:7 61.83 241 32.89 1e-19 Heme exporter protein C OS Paracoccus denitrificans (strain Pd 1222) GN ccmC PE 3 SV 2
rpsblast_cdd gnl|CDD|162244 42 218 + 177 Gaps:7 100.00 184 51.63 9e-65 TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes ccmA B C D E F G and H. The posttranslational pathway includes the transport of heme moiety the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter ccmC and D participate in the heme transfer to ccmE which function as a periplasmic heme chaperone. The presence of ccmF G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
rpsblast_cdd gnl|CDD|31098 3 203 + 201 Gaps:8 74.38 281 31.10 4e-19 COG0755 CcmC ABC-type transport system involved in cytochrome c biogenesis permease component [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|144973 3 175 + 173 Gaps:27 93.84 211 24.75 1e-17 pfam01578 Cytochrom_C_asm Cytochrome C assembly protein. This family consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria CycK from Rhizobium CcmC from E. coli and Paracoccus denitrificans and orf240 from wheat mitochondria. The members of this family are probably integral membrane proteins with six predicted transmembrane helices. It has been proposed that members of this family comprise a membrane component of an ABC (ATP binding cassette) transporter complex. It is also proposed that this transporter is necessary for transport of some component needed for cytochrome c assembly. One member CycK contains a putative heme-binding motif orf240 also contains a putative heme-binding motif and is a proposed ABC transporter with c-type heme as its proposed substrate. However it seems unlikely that all members of this family transport heme nor c-type apocytochromes because CcmC in the putative CcmABC transporter transports neither.

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 5 214 210 PTHR30071:SF0 none none none
PRINTS 194 218 25 PR01386 none Cytochrome c-type biogenesis protein CcmC signature IPR003557
PRINTS 118 138 21 PR01386 none Cytochrome c-type biogenesis protein CcmC signature IPR003557
PRINTS 147 173 27 PR01386 none Cytochrome c-type biogenesis protein CcmC signature IPR003557
PRINTS 59 79 21 PR01386 none Cytochrome c-type biogenesis protein CcmC signature IPR003557
PRINTS 42 59 18 PR01386 none Cytochrome c-type biogenesis protein CcmC signature IPR003557
PRINTS 97 117 21 PR01386 none Cytochrome c-type biogenesis protein CcmC signature IPR003557
Phobius 114 118 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 92 113 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 21 40 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 119 139 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 140 250 111 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
TIGRFAM 42 218 177 TIGR01191 none ccmC: heme exporter protein CcmC IPR003557
Phobius 41 59 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 16 172 157 PF01578 none Cytochrome C assembly protein IPR002541
PANTHER 5 214 210 PTHR30071 none none none
Phobius 60 80 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 81 91 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 20 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

4 Localization

Analysis Start End Length
TMHMM 122 140 18
TMHMM 85 107 22
TMHMM 58 80 22
TMHMM 21 43 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting