Protein : Qrob_P0665820.2 Q. robur
Protein Identifier  ? Qrob_P0665820.2 Organism . Name  Quercus robur
Score  99.6 Score Type  egn
Protein Description  (M=1) PF06449 - Mitochondrial domain of unknown function (DUF1082) Code Enzyme  EC:3.6.3.14
Gene Prediction Quality  validated Protein length 

Sequence

Length: 354  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
GO:0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:7498640 1 259 + 259 none 77.54 334 93.44 1e-160 rpl2 ViviM_p059 ribosomal protein L2
blastp_kegg lcl|csv:11123879 2 259 + 258 Gaps:6 75.66 341 86.82 1e-147 rpl2 CusaM_p23 ribosomal protein L2
blastp_kegg lcl|csv:101214767 2 259 + 258 Gaps:6 66.84 386 86.82 2e-146 60S ribosomal protein L2 mitochondrial-like
blastp_kegg lcl|csv:101228734 2 259 + 258 Gaps:6 56.70 455 86.82 7e-146 60S ribosomal protein L2 mitochondrial-like
blastp_kegg lcl|sot:102602648 1 259 + 259 Gaps:8 75.59 340 85.99 8e-141 60S ribosomal protein L2 mitochondrial-like
blastp_kegg lcl|pda:11542552 1 259 + 259 Gaps:6 46.06 558 83.66 3e-138 rpl2 DP_rpl2 ribosomal protein L2
blastp_kegg lcl|sly:101261309 15 259 + 245 Gaps:6 66.94 366 86.53 1e-137 60S ribosomal protein L2 mitochondrial-like
blastp_kegg lcl|ath:ArthMp049 8 259 + 252 Gaps:5 71.92 349 80.88 4e-129 rpl2 ribosomal protein L2
blastp_kegg lcl|ath:AT2G07715 8 259 + 252 Gaps:5 64.52 389 80.88 3e-128 60S ribosomal protein L2-like protein
blastp_kegg lcl|eus:EUTSA_v10013769mg 8 259 + 252 Gaps:5 64.52 389 78.88 1e-124 hypothetical protein
blastp_pdb 2gyc_A 19 75 + 57 Gaps:1 25.55 227 55.17 1e-11 mol:protein length:227 50S ribosomal protein L2
blastp_pdb 2gya_A 19 75 + 57 Gaps:1 25.55 227 55.17 1e-11 mol:protein length:227 50S ribosomal protein L2
blastp_pdb 2j28_C 5 75 + 71 Gaps:1 26.97 267 45.83 1e-11 mol:protein length:267 50S RIBOSOMAL PROTEIN L2
blastp_pdb 3e1d_N 5 75 + 71 Gaps:1 26.67 270 45.83 1e-11 mol:protein length:270 50S ribosomal protein L2
blastp_pdb 3e1b_N 5 75 + 71 Gaps:1 26.67 270 45.83 1e-11 mol:protein length:270 50S ribosomal protein L2
blastp_pdb 3j14_D 5 75 + 71 Gaps:1 26.47 272 45.83 1e-11 mol:protein length:272 50S ribosomal protein L2
blastp_pdb 3j12_D 5 75 + 71 Gaps:1 26.47 272 45.83 1e-11 mol:protein length:272 50S ribosomal protein L2
blastp_pdb 3j11_D 5 75 + 71 Gaps:1 26.47 272 45.83 1e-11 mol:protein length:272 50S ribosomal protein L2
blastp_pdb 3j0y_D 5 75 + 71 Gaps:1 26.47 272 45.83 1e-11 mol:protein length:272 50S ribosomal protein L2
blastp_pdb 3j0w_D 5 75 + 71 Gaps:1 26.47 272 45.83 1e-11 mol:protein length:272 50S ribosomal protein L2
blastp_uniprot_sprot sp|P93311|RM02_ARATH 8 259 + 252 Gaps:5 71.92 349 80.88 1e-130 60S ribosomal protein L2 mitochondrial OS Arabidopsis thaliana GN RPL2 PE 3 SV 1
blastp_uniprot_sprot sp|P92812|RM02_ORYSJ 1 259 + 259 none 37.65 502 83.60 1e-49 60S ribosomal protein L2 mitochondrial OS Oryza sativa subsp. japonica GN RPL2 PE 2 SV 2
blastp_uniprot_sprot sp|Q2F969|RM02_ORYSI 1 259 + 259 none 37.65 502 83.60 1e-49 60S ribosomal protein L2 mitochondrial OS Oryza sativa subsp. indica GN RPL2 PE 2 SV 2
blastp_uniprot_sprot sp|P0C8K6|RM02_ORYSA 1 259 + 259 none 37.65 502 83.60 1e-49 60S ribosomal protein L2 mitochondrial OS Oryza sativa GN RPL2 PE 2 SV 1
blastp_uniprot_sprot sp|P26859|RM02_MARPO 1 77 + 77 Gaps:2 15.77 501 79.75 3e-28 60S ribosomal protein L2 mitochondrial OS Marchantia polymorpha GN RPL2 PE 3 SV 2
blastp_uniprot_sprot sp|P41248|YMF19_HELAN 261 319 + 59 none 37.11 159 96.61 3e-26 Putative ATP synthase protein YMF19 OS Helianthus annuus GN YMF19 PE 3 SV 1
blastp_uniprot_sprot sp|P08746|YMF19_OENBE 261 319 + 59 none 37.11 159 89.83 1e-23 Putative ATP synthase protein YMF19 OS Oenothera berteroana GN YMF19 PE 3 SV 2
blastp_uniprot_sprot sp|Q03152|YMF19_BRANA 261 319 + 59 Gaps:6 37.34 158 79.66 2e-18 Putative ATP synthase protein YMF19 OS Brassica napus GN YMF19 PE 3 SV 1
blastp_uniprot_sprot sp|P93303|YMF19_ARATH 261 319 + 59 Gaps:6 37.34 158 79.66 2e-18 ATP synthase protein YMF19 OS Arabidopsis thaliana GN YMF19 PE 1 SV 1
blastp_uniprot_sprot sp|Q06564|YMF19_RAPSA 261 319 + 59 Gaps:6 37.34 158 77.97 1e-17 Putative ATP synthase protein YMF19 OS Raphanus sativus GN YMF19 PE 3 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 260 305 46 PF06449 "KEGG:00190+3.6.3.14","KEGG:00195+3.6.3.14","MetaCyc:PWY-7219" Mitochondrial domain of unknown function (DUF1082) IPR009455
SUPERFAMILY 7 77 71 SSF50249 none none IPR012340
PANTHER 12 77 66 PTHR13691 none none IPR002171
Pfam 22 75 54 PF00181 none Ribosomal Proteins L2, RNA binding domain IPR022666
Gene3D 5 77 73 G3DSA:2.40.50.140 none none IPR012340

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting