Protein : Qrob_P0625500.2 Q. robur
Protein Identifier  ? Qrob_P0625500.2 Organism . Name  Quercus robur
Score  66.1 Score Type  egn
Protein Description  (M=3) PTHR30009 - CYTOCHROME C-TYPE SYNTHESIS PROTEIN AND PTS TRANSMEMBRANE COMPONENT Gene Prediction Quality  validated
Protein length 

Sequence

Length: 757  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0020037 heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
GO:0017004 cytochrome complex assembly The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions.
GO:0015232 heme transporter activity Enables the directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of or within a cell, or between cells.
GO:0015886 heme transport The directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_Mp14 15 722 + 708 Gaps:42 95.82 598 94.76 0.0 ccmFn cytochrome c biogenesis FN
blastp_kegg lcl|mdm:13630188 1 722 + 722 Gaps:47 99.83 587 93.17 0.0 ccmFN C3258_p29 ccmFN
blastp_kegg lcl|pmum:103342946 15 722 + 708 Gaps:52 95.81 596 92.99 0.0 probable cytochrome c biosynthesis protein
blastp_kegg lcl|vvi:7498641 15 722 + 708 Gaps:45 99.30 574 91.40 0.0 ccmFN ViviM_p019 CcmFN
blastp_kegg lcl|gmx:15308607 17 722 + 706 Gaps:44 98.79 578 92.64 0.0 ccmFn GlmaxMp51 cytochrome c biogenesis FN
blastp_kegg lcl|sly:101261008 15 723 + 709 Gaps:53 98.64 589 91.91 0.0 probable cytochrome c biosynthesis protein-like
blastp_kegg lcl|csv:11123857 15 721 + 707 Gaps:46 99.13 573 89.96 0.0 ccmFn CusaM_p09 cytochrome c biogenesis FN
blastp_kegg lcl|csv:101231599 16 721 + 706 Gaps:46 98.61 575 89.95 0.0 probable cytochrome c biosynthesis protein-like
blastp_kegg lcl|csv:101211062 16 721 + 706 Gaps:46 98.61 575 89.95 0.0 probable cytochrome c biosynthesis protein-like
blastp_kegg lcl|csv:101211259 16 721 + 706 Gaps:46 98.61 575 89.95 0.0 probable cytochrome c biosynthesis protein-like
blastp_uniprot_sprot sp|Q04647|CCBS_DAUCA 15 722 + 708 Gaps:44 99.31 579 92.00 0.0 Probable cytochrome c biosynthesis protein OS Daucus carota PE 2 SV 1
blastp_uniprot_sprot sp|Q04648|CCBS_OENBE 15 720 + 706 Gaps:42 98.96 577 85.99 0.0 Probable cytochrome c biosynthesis protein OS Oenothera berteroana PE 2 SV 3
blastp_uniprot_sprot sp|Q9T6H8|CCF1_ARATH 15 522 + 508 Gaps:43 97.38 382 84.41 0.0 Putative cytochrome c biogenesis ccmF N-terminal-like mitochondrial protein OS Arabidopsis thaliana GN CCMFN1 PE 1 SV 3
blastp_uniprot_sprot sp|Q33884|CCF2_ARATH 524 722 + 199 none 98.03 203 90.45 5e-121 Putative cytochrome c biogenesis ccmF C-terminal-like mitochondrial protein 3 (Fragment) OS Arabidopsis thaliana GN CCMFN2 PE 1 SV 2
blastp_uniprot_sprot sp|P36180|CCBS_MARPO 179 693 + 515 Gaps:74 81.14 509 55.93 4e-92 Probable cytochrome c biosynthesis protein OS Marchantia polymorpha GN YMF4 PE 3 SV 1
blastp_uniprot_sprot sp|Q9I3N2|CCMF_PSEAE 566 684 + 119 Gaps:4 18.72 657 50.41 8e-28 Cytochrome c-type biogenesis protein CcmF OS Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN ccmF PE 3 SV 1
blastp_uniprot_sprot sp|P45037|CCMF_HAEIN 566 699 + 134 Gaps:9 21.76 648 44.68 1e-27 Cytochrome c-type biogenesis protein CcmF OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN ccmF PE 3 SV 1
blastp_uniprot_sprot sp|P33927|CCMF_ECOLI 566 693 + 128 Gaps:4 20.40 647 46.21 3e-26 Cytochrome c-type biogenesis protein CcmF OS Escherichia coli (strain K12) GN ccmF PE 1 SV 1
blastp_uniprot_sprot sp|P45403|CCMF_BRADU 565 684 + 120 Gaps:4 18.79 660 48.39 7e-26 Cytochrome c-type biogenesis protein CycK OS Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN cycK PE 3 SV 2
blastp_uniprot_sprot sp|P45404|CCMF_RHIME 565 684 + 120 Gaps:4 18.34 676 48.39 1e-25 Cytochrome c-type biogenesis protein CycK OS Rhizobium meliloti (strain 1021) GN cycK PE 3 SV 2
rpsblast_cdd gnl|CDD|129451 566 684 + 119 Gaps:4 21.35 576 47.97 1e-32 TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans encoding a putative transporter results in formation of an unstable apocytochrome c and deficiency in siderophore production.
rpsblast_cdd gnl|CDD|132189 565 684 + 120 Gaps:4 19.75 628 49.19 3e-32 TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system or system I for c-type cytochrome biogenesis (GenProp0678). Members are found as a rule next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule members are found in species that also encode bona fide members of the CcmF CcmG and CcmH families.
rpsblast_cdd gnl|CDD|31333 566 695 + 130 Gaps:4 20.68 648 44.78 6e-30 COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|182414 568 680 + 113 Gaps:7 19.96 571 48.25 6e-24 PRK10369 PRK10369 heme lyase subunit NrfE Provisional.
rpsblast_cdd gnl|CDD|144973 565 649 + 85 Gaps:4 40.28 211 30.59 1e-11 pfam01578 Cytochrom_C_asm Cytochrome C assembly protein. This family consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria CycK from Rhizobium CcmC from E. coli and Paracoccus denitrificans and orf240 from wheat mitochondria. The members of this family are probably integral membrane proteins with six predicted transmembrane helices. It has been proposed that members of this family comprise a membrane component of an ABC (ATP binding cassette) transporter complex. It is also proposed that this transporter is necessary for transport of some component needed for cytochrome c assembly. One member CycK contains a putative heme-binding motif orf240 also contains a putative heme-binding motif and is a proposed ABC transporter with c-type heme as its proposed substrate. However it seems unlikely that all members of this family transport heme nor c-type apocytochromes because CcmC in the putative CcmABC transporter transports neither.

42 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 607 625 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 37 42 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 19 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PRINTS 378 390 13 PR01412 none Cytochrome c-type biogenesis protein CcbS signature IPR003569
PRINTS 179 194 16 PR01412 none Cytochrome c-type biogenesis protein CcbS signature IPR003569
PRINTS 423 444 22 PR01412 none Cytochrome c-type biogenesis protein CcbS signature IPR003569
PRINTS 669 689 21 PR01412 none Cytochrome c-type biogenesis protein CcbS signature IPR003569
PRINTS 209 221 13 PR01412 none Cytochrome c-type biogenesis protein CcbS signature IPR003569
PRINTS 394 409 16 PR01412 none Cytochrome c-type biogenesis protein CcbS signature IPR003569
PRINTS 549 562 14 PR01412 none Cytochrome c-type biogenesis protein CcbS signature IPR003569
PRINTS 619 640 22 PR01412 none Cytochrome c-type biogenesis protein CcbS signature IPR003569
Phobius 20 36 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 588 606 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 685 756 72 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 201 221 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 43 64 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 563 722 160 PTHR30009 none none none
PANTHER 223 248 26 PTHR30009 none none none
Phobius 76 98 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 99 175 77 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 176 195 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 656 666 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 626 631 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 222 566 345 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 361 452 92 PTHR30009 none none none
Phobius 567 587 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 361 452 92 PTHR30009:SF0 none none IPR003567
PANTHER 563 722 160 PTHR30009:SF0 none none IPR003567
Phobius 632 655 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PRINTS 568 594 27 PR01410 none Cytochrome c-type biogenesis protein signature IPR003567

5 Localization

Analysis Start End Length
TMHMM 42 61 19
TMHMM 666 684 18
TMHMM 15 35 20
TMHMM 76 98 22
TMHMM 202 224 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting