Protein : Qrob_P0613810.2 Q. robur
Protein Identifier  ? Qrob_P0613810.2 Organism . Name  Quercus robur
Score  59.0 Score Type  egn
Protein Description  (M=1) KOG1525//KOG1957 - Sister chromatid cohesion complex Cohesin subunit PDS5 [Cell cycle control cell division chromosome partitioning]. // DNA topoisomerase III beta [Replication recombination and repair]. Code Enzyme  EC:5.99.1.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 515  
Kegg Orthology  K03165
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO:0003917 DNA topoisomerase type I activity Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103960364 244 514 + 271 none 31.44 862 84.13 1e-156 DNA topoisomerase 3-beta
blastp_kegg lcl|vvi:100260076 244 514 + 271 Gaps:3 30.65 894 82.48 1e-156 DNA topoisomerase 3-beta-1-like
blastp_kegg lcl|cit:102617834 244 514 + 271 Gaps:4 30.62 898 81.82 2e-155 DNA topoisomerase 3-beta-1-like
blastp_kegg lcl|tcc:TCM_020175 242 514 + 273 Gaps:4 31.91 868 83.03 3e-155 DNA topoisomerase type IA core
blastp_kegg lcl|pop:POPTR_0014s14620g 244 514 + 271 Gaps:1 32.50 837 80.51 1e-154 POPTRDRAFT_1099630 DNA topoisomerase family protein
blastp_kegg lcl|mdm:103400621 244 514 + 271 none 31.44 862 83.76 2e-154 DNA topoisomerase 3-beta-1
blastp_kegg lcl|fve:101301962 244 514 + 271 none 31.44 862 84.87 4e-154 DNA topoisomerase 3-beta-1-like
blastp_kegg lcl|rcu:RCOM_1646110 244 514 + 271 Gaps:2 31.56 865 86.08 4e-154 prokaryotic DNA topoisomerase putative (EC:5.99.1.2)
blastp_kegg lcl|pper:PRUPE_ppa001274mg 244 514 + 271 Gaps:4 31.76 866 83.64 4e-153 hypothetical protein
blastp_kegg lcl|pmum:103322635 244 514 + 271 Gaps:4 31.76 866 83.64 6e-153 DNA topoisomerase 3-beta-1
blastp_uniprot_sprot sp|Q9Z321|TOP3B_MOUSE 244 479 + 236 Gaps:19 25.41 862 53.88 1e-71 DNA topoisomerase 3-beta-1 OS Mus musculus GN Top3b PE 2 SV 1
blastp_uniprot_sprot sp|O95985|TOP3B_HUMAN 244 479 + 236 Gaps:19 25.41 862 53.42 7e-71 DNA topoisomerase 3-beta-1 OS Homo sapiens GN TOP3B PE 2 SV 1
blastp_uniprot_sprot sp|O96651|TOP3B_DROME 243 476 + 234 Gaps:21 24.57 875 47.44 1e-55 DNA topoisomerase 3-beta OS Drosophila melanogaster GN Top3beta PE 2 SV 2
blastp_uniprot_sprot sp|Q9HFF5|PDS5_SCHPO 52 200 + 149 Gaps:1 12.45 1205 28.67 7e-13 Sister chromatid cohesion protein pds5 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN pds5 PE 1 SV 1
blastp_uniprot_sprot sp|Q6A026|PDS5A_MOUSE 1 221 + 221 Gaps:10 16.44 1332 23.74 2e-11 Sister chromatid cohesion protein PDS5 homolog A OS Mus musculus GN Pds5a PE 3 SV 3
blastp_uniprot_sprot sp|Q29RF7|PDS5A_HUMAN 1 221 + 221 Gaps:10 16.38 1337 23.74 3e-11 Sister chromatid cohesion protein PDS5 homolog A OS Homo sapiens GN PDS5A PE 1 SV 1
blastp_uniprot_sprot sp|A4L9P7|PDS5A_RAT 1 221 + 221 Gaps:10 16.43 1333 23.74 3e-11 Sister chromatid cohesion protein PDS5 homolog A OS Rattus norvegicus GN Pds5a PE 2 SV 1
blastp_uniprot_sprot sp|Q5F3V3|PDS5A_CHICK 12 221 + 210 Gaps:8 15.49 1330 23.30 2e-10 Sister chromatid cohesion protein PDS5 homolog A OS Gallus gallus GN PDS5A PE 2 SV 2
blastp_uniprot_sprot sp|Q5U241|PD5BB_XENLA 12 221 + 210 Gaps:8 14.07 1464 22.33 6e-10 Sister chromatid cohesion protein PDS5 homolog B-B OS Xenopus laevis GN pds5b-b PE 2 SV 2
blastp_uniprot_sprot sp|Q4KLU7|PD5AB_XENLA 12 221 + 210 Gaps:8 15.57 1323 22.82 8e-10 Sister chromatid cohesion protein PDS5 homolog A-B OS Xenopus laevis GN pds5a-b PE 1 SV 1
rpsblast_kog gnl|CDD|37168 247 499 + 253 Gaps:24 41.62 555 28.57 2e-39 KOG1957 KOG1957 KOG1957 DNA topoisomerase III beta [Replication recombination and repair].
rpsblast_kog gnl|CDD|36738 9 225 + 217 Gaps:23 34.68 1266 31.66 3e-37 KOG1525 KOG1525 KOG1525 Sister chromatid cohesion complex Cohesin subunit PDS5 [Cell cycle control cell division chromosome partitioning].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 368 514 147 PTHR11390:SF20 none none none
Gene3D 23 205 183 G3DSA:1.25.10.10 none none IPR011989
SUPERFAMILY 23 204 182 SSF48371 none none IPR016024
PANTHER 244 303 60 PTHR11390 none none IPR000380
Coils 26 47 22 Coil none none none
PANTHER 327 350 24 PTHR11390:SF20 none none none
PANTHER 244 303 60 PTHR11390:SF20 none none none
PANTHER 368 514 147 PTHR11390 none none IPR000380
PANTHER 327 350 24 PTHR11390 none none IPR000380

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting