Protein : Qrob_P0596360.2 Q. robur
Protein Identifier  ? Qrob_P0596360.2 Organism . Name  Quercus robur
Score  93.1 Score Type  egn
Protein Description  (M=5) PTHR14950//PTHR14950:SF18 - HELICASE-RELATED // SUBFAMILY NOT NAMED Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 150  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0002s21490g 12 148 + 137 none 47.74 287 70.80 1e-66 POPTRDRAFT_755875 ribonuclease 3 family protein
blastp_kegg lcl|cic:CICLE_v10016164mg 12 148 + 137 none 48.24 284 69.34 1e-65 hypothetical protein
blastp_kegg lcl|cit:102609714 12 148 + 137 none 15.97 858 69.34 3e-61 uncharacterized LOC102609714
blastp_kegg lcl|pmum:103329362 12 146 + 135 Gaps:1 44.82 299 68.66 4e-61 ribonuclease 3-like protein 3
blastp_kegg lcl|pxb:103954957 5 146 + 142 Gaps:1 47.80 295 67.38 1e-60 ribonuclease 3-like protein 3
blastp_kegg lcl|pper:PRUPE_ppa024586mg 12 146 + 135 Gaps:1 51.94 258 67.91 1e-60 hypothetical protein
blastp_kegg lcl|mtr:MTR_3g079980 14 146 + 133 none 23.54 565 68.42 2e-60 Endoribonuclease Dicer-like protein
blastp_kegg lcl|tcc:TCM_002131 14 146 + 133 none 44.19 301 68.42 9e-58 Ribonuclease 3-like protein 3 putative
blastp_kegg lcl|mdm:103407291 24 146 + 123 Gaps:1 83.56 146 68.85 1e-56 ribonuclease 3-like protein 3
blastp_kegg lcl|mtr:MTR_3g080000 14 146 + 133 none 41.30 322 61.65 2e-54 Ribonuclease 3-like protein
blastp_pdb 3c4t_A 36 89 + 54 Gaps:2 21.13 265 37.50 2e-07 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 3c4b_A 36 89 + 54 Gaps:2 21.13 265 37.50 2e-07 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 2eb1_C 36 74 + 39 none 19.50 200 43.59 2e-06 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_B 36 74 + 39 none 19.50 200 43.59 2e-06 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_A 36 74 + 39 none 19.50 200 43.59 2e-06 mol:protein length:200 Endoribonuclease Dicer
blastp_uniprot_sprot sp|Q69KJ0|RTL3_ORYSJ 5 146 + 142 Gaps:1 47.83 299 44.76 9e-37 Ribonuclease 3-like protein 3 OS Oryza sativa subsp. japonica GN Os06g0358800 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 12 139 + 128 Gaps:8 7.12 1883 41.04 3e-19 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 12 119 + 108 Gaps:7 6.02 1909 40.87 3e-17 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6ATG6|RTL2_ORYSJ 28 138 + 111 Gaps:4 35.02 317 40.54 3e-16 Ribonuclease 3-like protein 2 OS Oryza sativa subsp. japonica GN Os05g0271300 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LTQ0|RTL2_ARATH 12 146 + 135 Gaps:7 35.81 391 31.43 2e-13 Ribonuclease 3-like protein 2 OS Arabidopsis thaliana GN RTL2 PE 1 SV 1
blastp_uniprot_sprot sp|Q10HL3|DCL2A_ORYSJ 1 142 + 142 Gaps:7 10.28 1410 28.97 2e-11 Endoribonuclease Dicer homolog 2a OS Oryza sativa subsp. japonica GN DCL2A PE 2 SV 1
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 27 144 + 118 Gaps:9 7.33 1651 35.54 3e-11 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q3EBC8|DCL2_ARATH 13 97 + 85 none 6.12 1388 36.47 1e-10 Endoribonuclease Dicer homolog 2 OS Arabidopsis thaliana GN At3g03300 PE 1 SV 2
blastp_uniprot_sprot sp|Q69LX2|DCL2B_ORYSJ 33 142 + 110 Gaps:6 8.13 1377 33.04 2e-10 Endoribonuclease Dicer homolog 2b OS Oryza sativa subsp. japonica GN DCL2B PE 2 SV 2
blastp_uniprot_sprot sp|Q7XD96|DCL3B_ORYSJ 36 90 + 55 none 3.36 1637 49.09 3e-10 Endoribonuclease Dicer homolog 3b OS Oryza sativa subsp. japonica GN DCL3B PE 3 SV 2
rpsblast_cdd gnl|CDD|178863 36 144 + 109 Gaps:13 50.66 229 32.76 1e-09 PRK00102 rnc ribonuclease III Reviewed.
rpsblast_cdd gnl|CDD|30916 30 144 + 115 Gaps:13 51.91 235 27.87 3e-07 COG0571 Rnc dsRNA-specific ribonuclease [Transcription].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 25 75 51 G3DSA:1.10.1520.10 none none IPR000999
Pfam 82 141 60 PF00035 none Double-stranded RNA binding motif IPR014720
Gene3D 81 143 63 G3DSA:3.30.160.20 none none IPR014720
SUPERFAMILY 21 78 58 SSF69065 none none IPR000999
PANTHER 5 146 142 PTHR14950:SF18 none none none
SUPERFAMILY 79 143 65 SSF54768 none none none
SMART 82 143 62 SM00358 none Double-stranded RNA binding motif IPR014720
PANTHER 5 146 142 PTHR14950 none none none

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting