Protein : Qrob_P0595300.2 Q. robur
Protein Identifier  ? Qrob_P0595300.2 Organism . Name  Quercus robur
Score  92.0 Score Type  egn
Protein Description  (M=1) PTHR30603:SF0 - RNA POLYMERASE SIGMA FACTOR RPO Gene Prediction Quality  validated
Protein length 

Sequence

Length: 433  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO:0016987 sigma factor activity A sigma factor is the promoter specificity subunit of eubacterial-type multisubunit RNA polymerases, those whose core subunit composition is often described as alpha(2)-beta-beta-prime. (This type of multisubunit RNA polymerase complex is known to be found in eubacteria and plant plastids). Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, this binds specifically to promoter sequences, with the sigma factor making sequence specific contacts with the promoter elements. The sigma subunit is released from the elongating form of the polymerase and is thus free to act catalytically for multiple RNA polymerase core enzymes.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa017025mg 1 432 + 432 Gaps:20 100.00 440 65.23 1e-162 hypothetical protein
blastp_kegg lcl|pmum:103330659 1 432 + 432 Gaps:17 99.77 442 63.04 1e-161 RNA polymerase sigma factor sigD chloroplastic
blastp_kegg lcl|pxb:103945510 1 432 + 432 Gaps:20 100.00 436 63.76 2e-149 RNA polymerase sigma factor sigD chloroplastic
blastp_kegg lcl|vvi:100244848 114 426 + 313 Gaps:2 73.94 426 65.08 3e-136 RNA polymerase sigma factor rpoD-like
blastp_kegg lcl|cic:CICLE_v10033747mg 1 431 + 431 Gaps:13 100.00 436 55.28 1e-135 hypothetical protein
blastp_kegg lcl|cit:102630560 1 431 + 431 Gaps:13 100.00 436 55.05 2e-134 RNA polymerase sigma factor sigD chloroplastic-like
blastp_kegg lcl|fve:101311426 38 432 + 395 Gaps:19 87.17 452 60.91 2e-133 RNA polymerase sigma factor sigD chloroplastic-like
blastp_kegg lcl|mtr:MTR_3g033420 15 432 + 418 Gaps:19 99.01 403 57.64 3e-131 RNA polymerase sigma factor
blastp_kegg lcl|cam:101506423 15 432 + 418 Gaps:23 99.02 407 56.58 2e-125 RNA polymerase sigma factor sigD chloroplastic-like
blastp_kegg lcl|csv:101218092 1 431 + 431 Gaps:9 100.00 436 49.08 2e-116 RNA polymerase sigma factor sigD chloroplastic-like
blastp_pdb 1l9u_Q 187 426 + 240 Gaps:13 74.40 332 40.49 8e-44 mol:protein length:332 SIGMA FACTOR SIGA
blastp_pdb 1l9u_H 187 426 + 240 Gaps:13 74.40 332 40.49 8e-44 mol:protein length:332 SIGMA FACTOR SIGA
blastp_pdb 3eql_P 187 418 + 232 Gaps:8 55.32 423 41.03 1e-42 mol:protein length:423 RNA polymerase sigma factor rpoD
blastp_pdb 3eql_F 187 418 + 232 Gaps:8 55.32 423 41.03 1e-42 mol:protein length:423 RNA polymerase sigma factor rpoD
blastp_pdb 3dxj_P 187 418 + 232 Gaps:8 55.32 423 41.03 1e-42 mol:protein length:423 RNA polymerase pricipal sigma factor (RpoD)
blastp_pdb 3dxj_F 187 418 + 232 Gaps:8 55.32 423 41.03 1e-42 mol:protein length:423 RNA polymerase pricipal sigma factor (RpoD)
blastp_pdb 2cw0_P 187 418 + 232 Gaps:8 55.32 423 41.03 1e-42 mol:protein length:423 RNA polymerase sigma factor rpoD
blastp_pdb 2cw0_F 187 418 + 232 Gaps:8 55.32 423 41.03 1e-42 mol:protein length:423 RNA polymerase sigma factor rpoD
blastp_pdb 2be5_P 187 418 + 232 Gaps:8 55.32 423 41.03 1e-42 mol:protein length:423 RNA polymerase sigma factor rpoD
blastp_pdb 2be5_F 187 418 + 232 Gaps:8 55.32 423 41.03 1e-42 mol:protein length:423 RNA polymerase sigma factor rpoD
blastp_uniprot_sprot sp|Q9ZSL6|SIGD_ARATH 128 430 + 303 Gaps:3 71.60 419 60.67 1e-115 RNA polymerase sigma factor sigD chloroplastic OS Arabidopsis thaliana GN SIGD PE 2 SV 1
blastp_uniprot_sprot sp|O22056|SIGB_ARATH 135 432 + 298 none 52.10 572 35.57 4e-60 RNA polymerase sigma factor sigB OS Arabidopsis thaliana GN SIGB PE 2 SV 2
blastp_uniprot_sprot sp|Q9LD95|SIGF_ARATH 135 419 + 285 none 52.10 547 39.65 4e-59 RNA polymerase sigma factor sigF chloroplastic OS Arabidopsis thaliana GN SIGF PE 1 SV 1
blastp_uniprot_sprot sp|P26683|SIGA_NOSS1 139 429 + 291 Gaps:1 74.36 390 37.93 6e-57 RNA polymerase sigma factor SigA OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN sigA PE 3 SV 1
blastp_uniprot_sprot sp|P38023|SIGA1_SYNE7 139 429 + 291 Gaps:1 72.68 399 38.28 2e-54 RNA polymerase sigma factor SigA1 OS Synechococcus elongatus (strain PCC 7942) GN sigA1 PE 3 SV 2
blastp_uniprot_sprot sp|P52322|SIGA_MICAE 188 429 + 242 Gaps:1 57.93 416 40.66 9e-54 RNA polymerase sigma factor SigA OS Microcystis aeruginosa GN sigA PE 3 SV 1
blastp_uniprot_sprot sp|P74565|SIGA_SYNY3 194 429 + 236 Gaps:1 55.29 425 40.43 4e-52 RNA polymerase sigma factor SigA OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN sigA PE 3 SV 1
blastp_uniprot_sprot sp|Q31ME3|SIGA2_SYNE7 140 421 + 282 Gaps:3 88.44 320 35.34 2e-51 RNA polymerase sigma factor SigA2 OS Synechococcus elongatus (strain PCC 7942) GN sigA2 PE 1 SV 1
blastp_uniprot_sprot sp|Q31QR8|SIGA4_SYNE7 187 417 + 231 Gaps:1 74.60 311 40.52 5e-50 RNA polymerase sigma factor SigA4 OS Synechococcus elongatus (strain PCC 7942) GN sigA4 PE 3 SV 1
blastp_uniprot_sprot sp|P52329|SIGA_ENTFA 186 429 + 244 none 66.30 368 38.11 9e-50 RNA polymerase sigma factor SigA OS Enterococcus faecalis (strain ATCC 700802 / V583) GN sigA PE 3 SV 2

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 133 267 135 SSF88946 none none IPR013325
Pfam 199 265 67 PF04542 none Sigma-70 region 2 IPR007627
Gene3D 361 429 69 G3DSA:1.10.10.10 none none IPR011991
PRINTS 246 254 9 PR00046 none Major sigma-70 factor signature IPR000943
PRINTS 406 417 12 PR00046 none Major sigma-70 factor signature IPR000943
PRINTS 222 235 14 PR00046 none Major sigma-70 factor signature IPR000943
PRINTS 370 382 13 PR00046 none Major sigma-70 factor signature IPR000943
PRINTS 391 406 16 PR00046 none Major sigma-70 factor signature IPR000943
SUPERFAMILY 271 342 72 SSF88659 none none IPR013324
TIGRFAM 194 420 227 TIGR02937 none sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284
ProSitePatterns 222 235 14 PS00715 none Sigma-70 factors family signature 1. IPR000943
Gene3D 134 152 19 G3DSA:1.10.601.10 none none none
Gene3D 190 267 78 G3DSA:1.10.601.10 none none none
Pfam 280 353 74 PF04539 none Sigma-70 region 3 IPR007624
Gene3D 268 309 42 G3DSA:1.10.10.10 none none IPR011991
SUPERFAMILY 331 423 93 SSF88659 none none IPR013324
PANTHER 104 432 329 PTHR30603 none none none
PANTHER 104 432 329 PTHR30603:SF0 none none none
Pfam 366 418 53 PF04545 none Sigma-70, region 4 IPR007630

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting