Protein : Qrob_P0592810.2 Q. robur

Protein Identifier  ? Qrob_P0592810.2 Organism . Name  Quercus robur
Score  60.0 Score Type  egn
Protein Description  (M=1) K10773 - endonuclease III [EC:4.2.99.18] Code Enzyme  EC:4.2.99.18
Gene Prediction Quality  validated Protein length 

Sequence

Length: 174  
Kegg Orthology  K10773

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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0006284 base-excision repair In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103936242 33 172 + 140 Gaps:8 36.67 360 80.30 3e-65 endonuclease III homolog 1 chloroplastic-like
blastp_kegg lcl|pxb:103953610 33 172 + 140 Gaps:8 35.58 371 80.30 5e-65 endonuclease III homolog 1 chloroplastic
blastp_kegg lcl|cic:CICLE_v10020813mg 33 150 + 118 Gaps:6 31.37 357 91.07 4e-64 hypothetical protein
blastp_kegg lcl|pop:POPTR_0007s02060g 32 172 + 141 Gaps:8 36.74 362 77.44 5e-64 POPTRDRAFT_763841 endonuclease-related family protein
blastp_kegg lcl|gmx:100818398 33 150 + 118 Gaps:6 31.37 357 90.18 1e-63 endonuclease III-like protein 1-like
blastp_kegg lcl|mdm:103432714 33 172 + 140 Gaps:8 36.67 360 79.55 1e-63 endonuclease III homolog 1 chloroplastic
blastp_kegg lcl|pmum:103322401 33 150 + 118 Gaps:6 31.28 358 90.18 3e-63 endonuclease III homolog 1 chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa009900mg 33 150 + 118 Gaps:6 41.18 272 89.29 1e-62 hypothetical protein
blastp_kegg lcl|cit:102617365 33 150 + 118 Gaps:6 31.37 357 90.18 2e-62 endonuclease III-like protein 1-like
blastp_kegg lcl|rcu:RCOM_0143730 33 150 + 118 Gaps:6 31.37 357 86.61 6e-62 endonuclease III putative (EC:4.2.99.18)
blastp_pdb 1orp_A 69 142 + 74 Gaps:1 32.30 226 42.47 1e-13 mol:protein length:226 Endonuclease III
blastp_pdb 1orn_A 69 142 + 74 Gaps:1 32.30 226 42.47 1e-13 mol:protein length:226 Endonuclease III
blastp_pdb 1p59_A 69 142 + 74 Gaps:1 32.30 226 41.10 3e-13 mol:protein length:226 Endonuclease III
blastp_pdb 2abk_A 70 151 + 82 Gaps:5 38.39 211 40.74 5e-13 mol:protein length:211 ENDONUCLEASE III
blastp_pdb 1kg5_A 64 151 + 88 Gaps:3 38.67 225 33.33 8e-06 mol:protein length:225 A/G-specific adenine glycosylase
blastp_uniprot_sprot sp|Q2KID2|NTHL1_BOVIN 28 145 + 118 Gaps:7 36.39 305 54.05 2e-31 Endonuclease III-like protein 1 OS Bos taurus GN NTHL1 PE 2 SV 1
blastp_uniprot_sprot sp|P78549|NTHL1_HUMAN 28 145 + 118 Gaps:7 35.58 312 54.05 1e-29 Endonuclease III-like protein 1 OS Homo sapiens GN NTHL1 PE 1 SV 2
blastp_uniprot_sprot sp|O35980|NTHL1_MOUSE 28 145 + 118 Gaps:7 37.00 300 51.35 8e-29 Endonuclease III-like protein 1 OS Mus musculus GN Nthl1 PE 2 SV 1
blastp_uniprot_sprot sp|P54137|NTH1_CAEEL 66 153 + 88 Gaps:2 30.20 298 54.44 3e-23 Probable endonuclease III homolog OS Caenorhabditis elegans GN nth-1 PE 1 SV 2
blastp_uniprot_sprot sp|Q09907|NTH1_SCHPO 31 151 + 121 Gaps:9 33.24 355 42.37 8e-23 Endonuclease III homolog OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN nth1 PE 1 SV 1
blastp_uniprot_sprot sp|Q08214|NTG2_YEAST 44 143 + 100 Gaps:6 24.74 380 45.74 5e-20 DNA base excision repair N-glycosylase 2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN NTG2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9WYK0|END3_THEMA 66 144 + 79 Gaps:1 36.62 213 52.56 2e-18 Endonuclease III OS Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN nth PE 3 SV 1
blastp_uniprot_sprot sp|P31378|NTG1_YEAST 35 143 + 109 Gaps:6 25.81 399 38.83 2e-17 Mitochondrial DNA base excision repair N-glycosylase 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN NTG1 PE 1 SV 1
blastp_uniprot_sprot sp|Q58030|END3_METJA 30 139 + 110 Gaps:7 29.94 344 49.51 2e-17 Endonuclease III OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN nth PE 3 SV 2
blastp_uniprot_sprot sp|Q8SRB8|NTH1_ENCCU 70 143 + 74 Gaps:3 29.83 238 56.34 8e-16 Endonuclease III homolog OS Encephalitozoon cuniculi (strain GB-M1) GN NTH1 PE 1 SV 1
rpsblast_cdd gnl|CDD|30526 46 151 + 106 Gaps:7 46.92 211 42.42 6e-28 COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|197751 25 149 + 125 Gaps:8 78.52 149 37.61 2e-25 smart00478 ENDO3c endonuclease III. includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases.
rpsblast_cdd gnl|CDD|201417 25 151 + 127 Gaps:12 88.19 144 33.86 3e-22 pfam00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein. This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This includes endonuclease III EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases. The methyl-CPG binding protein MBD4 also contains a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family.
rpsblast_cdd gnl|CDD|28938 25 149 + 125 Gaps:11 75.95 158 32.50 4e-22 cd00056 ENDO3c endonuclease III includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases.
rpsblast_cdd gnl|CDD|130155 46 144 + 99 Gaps:7 48.17 191 38.04 4e-21 TIGR01083 nth endonuclease III. This equivalog HMM identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 21 151 131 PF00730 "Reactome:REACT_216" HhH-GPD superfamily base excision DNA repair protein IPR003265
Pfam 90 118 29 PF00633 none Helix-hairpin-helix motif IPR000445
ProSitePatterns 93 122 30 PS01155 "Reactome:REACT_216" Endonuclease III family signature. IPR004036
PANTHER 34 146 113 PTHR10359 none none none
SMART 25 172 148 SM00478 "Reactome:REACT_216" endonuclease III IPR003265
SUPERFAMILY 25 169 145 SSF48150 "Reactome:REACT_216" none IPR011257
Gene3D 114 150 37 G3DSA:1.10.1670.10 none none IPR023170
Gene3D 24 113 90 G3DSA:1.10.340.30 "Reactome:REACT_216" none IPR011257

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting