Protein : Qrob_P0575650.2 Q. robur
Protein Identifier  ? Qrob_P0575650.2 Organism . Name  Quercus robur
Score  17.1 Score Type  egn
Protein Description  (M=1) PTHR11076:SF13 - TERMINAL DEOXYCYTIDYL TRANSFERASE REV1 Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 751  
Kegg Orthology  K03515
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003684 damaged DNA binding Interacting selectively and non-covalently with damaged DNA.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0003887 DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
GO:0016779 nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.
GO:0000287 magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_007158 1 712 + 712 Gaps:30 61.09 1208 70.05 0.0 DNA-directed DNA polymerases putative
blastp_kegg lcl|pmum:103335230 1 710 + 710 Gaps:28 63.38 1136 70.28 0.0 DNA repair protein REV1
blastp_kegg lcl|cam:101491192 1 712 + 712 Gaps:34 64.68 1141 67.89 0.0 DNA repair protein REV1-like
blastp_kegg lcl|vvi:100247553 1 712 + 712 Gaps:25 62.38 1175 69.58 0.0 DNA repair protein REV1-like
blastp_kegg lcl|pper:PRUPE_ppa019938mg 1 740 + 740 Gaps:28 69.90 1073 67.87 0.0 hypothetical protein
blastp_kegg lcl|gmx:100778409 1 712 + 712 Gaps:42 64.22 1115 68.99 0.0 DNA repair protein REV1-like
blastp_kegg lcl|cit:102626428 40 712 + 673 Gaps:38 60.27 1120 72.59 0.0 DNA repair protein REV1-like
blastp_kegg lcl|pop:POPTR_0009s09740g 40 712 + 673 Gaps:89 62.47 1191 65.46 0.0 POPTRDRAFT_767640 UMUC-like DNA repair family protein
blastp_kegg lcl|mdm:103401299 1 712 + 712 Gaps:31 63.71 1138 66.76 0.0 DNA repair protein REV1
blastp_kegg lcl|pvu:PHAVU_002G053200g 1 712 + 712 Gaps:26 64.61 1133 66.67 0.0 hypothetical protein
blastp_pdb 3gqc_D 344 714 + 371 Gaps:99 92.06 504 37.72 2e-91 mol:protein length:504 DNA repair protein REV1
blastp_pdb 3gqc_C 344 714 + 371 Gaps:99 92.06 504 37.72 2e-91 mol:protein length:504 DNA repair protein REV1
blastp_pdb 3gqc_B 344 714 + 371 Gaps:99 92.06 504 37.72 2e-91 mol:protein length:504 DNA repair protein REV1
blastp_pdb 3gqc_A 344 714 + 371 Gaps:99 92.06 504 37.72 2e-91 mol:protein length:504 DNA repair protein REV1
blastp_pdb 3osp_A 344 707 + 364 Gaps:54 93.09 434 29.95 6e-42 mol:protein length:434 DNA repair protein REV1
blastp_pdb 3bjy_A 344 707 + 364 Gaps:54 93.09 434 29.95 6e-42 mol:protein length:434 DNA repair protein REV1
blastp_pdb 2aq4_A 344 707 + 364 Gaps:54 93.09 434 29.95 6e-42 mol:protein length:434 DNA repair protein REV1
blastp_pdb 3bq2_A 394 588 + 195 Gaps:22 61.30 354 34.10 1e-28 mol:protein length:354 DNA polymerase IV
blastp_pdb 3bq1_A 394 588 + 195 Gaps:22 61.30 354 34.10 1e-28 mol:protein length:354 DNA polymerase IV
blastp_pdb 3bq0_A 394 588 + 195 Gaps:22 61.30 354 34.10 1e-28 mol:protein length:354 DNA polymerase IV
blastp_uniprot_sprot sp|A3EWL3|REV1_ARATH 40 712 + 673 Gaps:35 62.08 1105 62.68 0.0 DNA repair protein REV1 OS Arabidopsis thaliana GN REV1 PE 2 SV 1
blastp_uniprot_sprot sp|Q920Q2|REV1_MOUSE 52 712 + 661 Gaps:158 64.45 1249 32.92 3e-118 DNA repair protein REV1 OS Mus musculus GN Rev1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R4N7|REV1_PONAB 52 714 + 663 Gaps:105 47.36 1250 40.03 1e-87 DNA repair protein REV1 OS Pongo abelii GN REV1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9UBZ9|REV1_HUMAN 52 714 + 663 Gaps:106 47.40 1251 39.63 2e-86 DNA repair protein REV1 OS Homo sapiens GN REV1 PE 1 SV 1
blastp_uniprot_sprot sp|Q4KWZ7|REV1_CHICK 70 714 + 645 Gaps:115 47.97 1255 39.70 6e-86 DNA repair protein REV1 OS Gallus gallus GN REV1 PE 2 SV 1
blastp_uniprot_sprot sp|O94623|REV1_SCHPO 64 707 + 644 Gaps:35 55.83 935 36.59 4e-66 DNA repair protein rev1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rev1 PE 3 SV 3
blastp_uniprot_sprot sp|Q6D1H8|DPO4_ERWCT 394 648 + 255 Gaps:23 77.27 352 37.13 4e-53 DNA polymerase IV OS Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|P63989|DPO4_SALTY 394 647 + 254 Gaps:23 77.21 351 39.11 2e-51 DNA polymerase IV OS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|P63990|DPO4_SALTI 394 647 + 254 Gaps:23 77.21 351 39.11 2e-51 DNA polymerase IV OS Salmonella typhi GN dinB PE 3 SV 1
blastp_uniprot_sprot sp|A9MY13|DPO4_SALPB 394 647 + 254 Gaps:23 77.21 351 39.11 2e-51 DNA polymerase IV OS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN dinB PE 3 SV 1

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 391 607 217 SSF56672 none none none
PIRSF 8 712 705 PIRSF036573 none none IPR012112
ProSiteProfiles 96 187 92 PS50172 none BRCT domain profile. IPR001357
PANTHER 58 229 172 PTHR11076:SF13 none none IPR012112
PANTHER 299 707 409 PTHR11076:SF13 none none IPR012112
SUPERFAMILY 97 188 92 SSF52113 none none IPR001357
Gene3D 614 711 98 G3DSA:3.30.1490.100 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" none IPR017961
Pfam 612 730 119 PF11799 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" impB/mucB/samB family C-terminal domain IPR017961
Gene3D 98 193 96 G3DSA:3.40.50.10190 none none IPR001357
ProSiteProfiles 394 557 164 PS50173 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" UmuC domain profile. IPR017963
Pfam 538 566 29 PF11798 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" IMS family HHH motif IPR024728
Pfam 397 474 78 PF00817 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" impB/mucB/samB family IPR001126
Pfam 473 525 53 PF00817 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" impB/mucB/samB family IPR001126
Gene3D 473 535 63 G3DSA:3.30.70.270 none none none
SUPERFAMILY 612 711 100 SSF100879 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" none IPR017961
Pfam 98 174 77 PF00533 none BRCA1 C Terminus (BRCT) domain IPR001357
Gene3D 537 607 71 G3DSA:1.10.150.20 none none none
SMART 98 177 80 SM00292 none breast cancer carboxy-terminal domain IPR001357
PANTHER 58 229 172 PTHR11076 none none none
PANTHER 299 707 409 PTHR11076 none none none

0 Localization

20 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting