Protein : Qrob_P0564190.2 Q. robur
Protein Identifier  ? Qrob_P0564190.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) 1.97.1.12 - Photosystem I. Code Enzyme  EC:1.97.1.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 279  
Kegg Orthology  K02690
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0009522 photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0009579 thylakoid A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:3950392 1 277 + 277 Gaps:20 40.46 734 87.88 5e-176 psaB LyesC2p070 photosystem I P700 apoprotein A2
blastp_kegg lcl|cit:4271130 1 277 + 277 Gaps:20 40.46 734 88.22 5e-176 psaB CisiCp020 photosystem I P700 chlorophyll a apoprotein A2
blastp_kegg lcl|vvi:4025090 1 277 + 277 Gaps:20 40.46 734 88.22 1e-175 psaB ViviCp020 photosystem I P700 chlorophyll a apoprotein A2
blastp_kegg lcl|sot:4099968 1 277 + 277 Gaps:20 40.46 734 87.54 1e-175 psaB SotuCp020 photosystem I P700 apoprotein A2
blastp_kegg lcl|csv:3429271 1 277 + 277 Gaps:20 40.46 734 87.54 2e-175 psaB CsCp033 PSI P700 apoprotein A2
blastp_kegg lcl|pmum:18668024 1 277 + 277 Gaps:20 40.46 734 87.88 2e-175 psaB CP95_p068 photosystem I P700 apoprotein A2
blastp_kegg lcl|pper:PrpeC_p020 1 277 + 277 Gaps:20 40.46 734 87.88 2e-175 psaB photosystem I P700 apoprotein A2
blastp_kegg lcl|fve:10251512 1 277 + 277 Gaps:20 40.46 734 87.21 1e-174 psaB FvH4_C0034 photosystem I P700 apoprotein A2
blastp_kegg lcl|mtr:MetrCp065 1 277 + 277 Gaps:20 40.46 734 86.87 3e-174 psaB photosystem I P700 chlorophyll a apoprotein A2
blastp_kegg lcl|tcc:ThcaC_p019 1 277 + 277 Gaps:20 40.46 734 86.87 4e-174 psaB photosystem I P700 apoprotein A2
blastp_pdb 2o01_B 2 277 + 276 Gaps:20 40.44 732 82.77 6e-167 mol:protein length:732 Photosystem I P700 chlorophyll a apoprotein A
blastp_pdb 2wsf_B 1 277 + 277 Gaps:20 40.46 734 82.83 2e-161 mol:protein length:734 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 2wse_B 1 277 + 277 Gaps:20 40.46 734 82.83 2e-161 mol:protein length:734 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 2wsc_B 1 277 + 277 Gaps:20 40.46 734 82.83 2e-161 mol:protein length:734 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 3lw5_B 2 277 + 276 Gaps:20 40.38 733 82.77 1e-160 mol:protein length:733 Photosystem I P700 chlorophyll a apoprotein A
blastp_pdb 3pcq_B 2 277 + 276 Gaps:20 40.00 740 70.27 2e-144 mol:protein length:740 Photosystem I P700 chlorophyll a apoprotein A
blastp_pdb 1jb0_B 2 277 + 276 Gaps:20 40.00 740 70.27 2e-144 mol:protein length:740 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 2o01_A 8 277 + 270 Gaps:60 37.67 754 41.20 1e-39 mol:protein length:754 Photosystem I P700 chlorophyll a apoprotein A
blastp_pdb 3lw5_A 8 277 + 270 Gaps:60 38.48 738 40.85 1e-38 mol:protein length:738 Photosystem I P700 chlorophyll a apoprotein A
blastp_pdb 2wsf_A 8 277 + 270 Gaps:60 37.47 758 40.85 1e-38 mol:protein length:758 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_uniprot_sprot sp|Q09FW2|PSAB_NANDO 1 277 + 277 Gaps:20 40.46 734 88.55 1e-178 Photosystem I P700 chlorophyll a apoprotein A2 OS Nandina domestica GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q68S07|PSAB_PANGI 1 277 + 277 Gaps:20 40.46 734 88.22 5e-178 Photosystem I P700 chlorophyll a apoprotein A2 OS Panax ginseng GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q33C37|PSAB_NICTO 1 277 + 277 Gaps:20 40.46 734 88.22 6e-178 Photosystem I P700 chlorophyll a apoprotein A2 OS Nicotiana tomentosiformis GN psaB PE 1 SV 1
blastp_uniprot_sprot sp|A6MMC1|PSAB_CHLSC 1 277 + 277 Gaps:20 40.46 734 88.22 6e-178 Photosystem I P700 chlorophyll a apoprotein A2 OS Chloranthus spicatus GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|P06407|PSAB_TOBAC 1 277 + 277 Gaps:20 40.46 734 88.22 7e-178 Photosystem I P700 chlorophyll a apoprotein A2 OS Nicotiana tabacum GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q3C1H9|PSAB_NICSY 1 277 + 277 Gaps:20 40.46 734 88.22 7e-178 Photosystem I P700 chlorophyll a apoprotein A2 OS Nicotiana sylvestris GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9M0|PSAB_LIRTU 1 277 + 277 Gaps:20 40.46 734 88.22 1e-177 Photosystem I P700 chlorophyll a apoprotein A2 OS Liriodendron tulipifera GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q49KZ9|PSAB_EUCGG 1 277 + 277 Gaps:20 40.46 734 88.22 2e-177 Photosystem I P700 chlorophyll a apoprotein A2 OS Eucalyptus globulus subsp. globulus GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|A0A334|PSAB_COFAR 1 277 + 277 Gaps:20 40.46 734 88.22 2e-177 Photosystem I P700 chlorophyll a apoprotein A2 OS Coffea arabica GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q2MIA1|PSAB_SOLLC 1 277 + 277 Gaps:20 40.46 734 87.88 2e-177 Photosystem I P700 chlorophyll a apoprotein A2 OS Solanum lycopersicum GN psaB PE 3 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 66 277 212 PF00223 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Photosystem I psaA/psaB protein IPR001280
Pfam 8 64 57 PF00223 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Photosystem I psaA/psaB protein IPR001280
Phobius 84 104 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 51 72 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 4 277 274 G3DSA:1.20.1130.10 "MetaCyc:PWY-101","MetaCyc:PWY-6785" none IPR001280
PANTHER 1 277 277 PTHR30128 none none none
Phobius 138 252 115 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 253 271 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 50 50 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 4 277 274 SSF81558 "MetaCyc:PWY-101","MetaCyc:PWY-6785" none IPR001280
PRINTS 46 69 24 PR00257 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Plant photosystem I psaA and psaB protein signature IPR001280
PRINTS 253 271 19 PR00257 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Plant photosystem I psaA and psaB protein signature IPR001280
Phobius 272 278 7 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 73 83 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 105 115 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 116 137 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 277 277 PTHR30128:SF5 none none none

4 Localization

Analysis Start End Length
TMHMM 46 68 22
TMHMM 253 275 22
TMHMM 118 137 19
TMHMM 83 105 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting