Protein : Qrob_P0552340.2 Q. robur
Protein Identifier  ? Qrob_P0552340.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR11514:SF33 - TRANSCRIPTION FACTOR BHLH27-RELATED (PTHR11514:SF33) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 413  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0016597 amino acid binding Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s32160g 18 404 + 387 Gaps:26 96.58 409 80.76 0.0 POPTRDRAFT_174909 hypothetical protein
blastp_kegg lcl|tcc:TCM_020336 18 404 + 387 Gaps:22 96.61 413 78.45 0.0 Basic helix-loop-helix DNA-binding superfamily protein
blastp_kegg lcl|vvi:100258890 1 404 + 404 Gaps:25 98.75 400 78.99 0.0 transcription factor FAMA-like
blastp_kegg lcl|rcu:RCOM_1019850 1 380 + 380 Gaps:23 92.70 411 76.12 0.0 DNA binding protein putative
blastp_kegg lcl|pmum:103324234 1 404 + 404 Gaps:40 98.42 443 69.50 0.0 transcription factor FAMA
blastp_kegg lcl|pper:PRUPE_ppa020429mg 16 404 + 389 Gaps:40 98.14 429 70.78 0.0 hypothetical protein
blastp_kegg lcl|mdm:103443491 15 404 + 390 Gaps:47 96.19 446 70.63 0.0 transcription factor FAMA
blastp_kegg lcl|pxb:103963506 15 404 + 390 Gaps:50 96.21 449 70.83 0.0 transcription factor FAMA
blastp_kegg lcl|pop:POPTR_0017s08160g 59 404 + 346 Gaps:25 98.60 356 80.63 0.0 POPTRDRAFT_258469 hypothetical protein
blastp_kegg lcl|cit:102616272 1 404 + 404 Gaps:42 98.83 427 70.14 3e-177 transcription factor FAMA-like
blastp_uniprot_sprot sp|Q56YJ8|FAMA_ARATH 43 404 + 362 Gaps:43 93.48 414 65.37 1e-149 Transcription factor FAMA OS Arabidopsis thaliana GN FMA PE 1 SV 1
blastp_uniprot_sprot sp|Q9SK91|BH094_ARATH 168 403 + 236 Gaps:15 73.36 304 45.74 3e-46 Transcription factor bHLH94 OS Arabidopsis thaliana GN BHLH94 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M8K6|MUTE_ARATH 205 400 + 196 Gaps:4 95.05 202 44.79 4e-45 Transcription factor MUTE OS Arabidopsis thaliana GN MUTE PE 2 SV 1
blastp_uniprot_sprot sp|Q9C7T4|BH096_ARATH 195 405 + 211 Gaps:12 62.81 320 45.27 1e-42 Transcription factor bHLH96 OS Arabidopsis thaliana GN BHLH96 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M128|BH057_ARATH 195 407 + 213 Gaps:12 64.44 315 44.83 8e-42 Transcription factor bHLH57 OS Arabidopsis thaliana GN BHLH57 PE 2 SV 1
blastp_uniprot_sprot sp|O81037|BH070_ARATH 198 400 + 203 Gaps:25 49.60 371 47.28 1e-39 Transcription factor bHLH70 OS Arabidopsis thaliana GN BHLH70 PE 2 SV 1
blastp_uniprot_sprot sp|Q700E4|BH067_ARATH 195 400 + 206 Gaps:24 51.96 358 46.24 1e-37 Transcription factor bHLH67 OS Arabidopsis thaliana GN BHLH67 PE 2 SV 1
blastp_uniprot_sprot sp|Q56XR0|BH071_ARATH 195 409 + 215 Gaps:21 69.72 327 40.79 2e-34 Transcription factor bHLH71 OS Arabidopsis thaliana GN BHLH71 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FKQ6|BH099_ARATH 195 405 + 211 Gaps:12 68.58 296 37.44 2e-30 Transcription factor bHLH99 OS Arabidopsis thaliana GN BHLH99 PE 2 SV 1
blastp_uniprot_sprot sp|Q700C7|SPCH_ARATH 203 400 + 198 none 43.68 364 56.60 4e-25 Transcription factor SPEECHLESS OS Arabidopsis thaliana GN SPCH PE 1 SV 1
rpsblast_cdd gnl|CDD|200925 203 254 + 52 none 100.00 52 32.69 9e-09 pfam00010 HLH Helix-loop-helix DNA-binding domain.
rpsblast_cdd gnl|CDD|28964 201 258 + 58 Gaps:1 98.33 60 33.90 6e-08 cd00083 HLH Helix-loop-helix domain found in specific DNA- binding proteins that act as transcription factors 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region HLH forms homo- and heterodimers dimerization creates a parallel left-handed four helix bundle the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3) those lacking the basic domain (Emc Id) function as negative regulators since they fail to bind DNA those (hairy E(spl) deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3) those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins the binding of small molecules (e.g. dioxin) and interactions with non-PAS proteins..

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 208 259 52 SM00353 none helix loop helix domain IPR011598
PANTHER 160 407 248 PTHR11514 none none none
PANTHER 49 139 91 PTHR11514 none none none
PANTHER 49 139 91 PTHR11514:SF33 none none none
PANTHER 160 407 248 PTHR11514:SF33 none none none
Gene3D 201 257 57 G3DSA:4.10.280.10 none none IPR011598
ProSiteProfiles 335 411 77 PS51671 none ACT domain profile. IPR002912
SUPERFAMILY 202 268 67 SSF47459 none none IPR011598
ProSiteProfiles 202 253 52 PS50888 none Myc-type, basic helix-loop-helix (bHLH) domain profile. IPR011598
Pfam 203 254 52 PF00010 none Helix-loop-helix DNA-binding domain IPR011598

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting