Protein : Qrob_P0550680.2 Q. robur
Protein Identifier  ? Qrob_P0550680.2 Organism . Name  Quercus robur
Score  72.4 Score Type  egn
Protein Description  (M=1) PF02392//PF03040 - Ycf4 // CemA family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 364  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0009522 photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0009579 thylakoid A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_4g050860 4 352 + 349 Gaps:59 54.33 751 58.33 3e-147 Apocytochrome F
blastp_kegg lcl|tcc:ThcaC_p032 135 363 + 229 none 100.00 229 89.96 3e-145 cemA chloroplast envelope membrane protein
blastp_kegg lcl|pmum:18668043 135 363 + 229 none 100.00 229 89.52 2e-142 cemA CP95_p055 chloroplast envelope membrane protein
blastp_kegg lcl|pper:PrpeC_p033 135 363 + 229 none 100.00 229 89.52 2e-142 cemA chloroplast envelope membrane protein
blastp_kegg lcl|fve:10251531 135 363 + 229 none 100.00 229 89.08 3e-136 cemA FvH4_C0053 chloroplast envelope membrane protein
blastp_kegg lcl|rcu:RCOM_ORF00055 137 363 + 227 none 99.56 228 85.90 6e-136 cemA envelope membrane protein
blastp_kegg lcl|vvi:4025049 135 363 + 229 none 100.00 229 89.08 4e-135 cemA ycf10 ViviCp033 heme-binding protein
blastp_kegg lcl|pop:Poptr_cp035 137 363 + 227 none 99.56 228 83.26 5e-131 cemA envelope membrane protein
blastp_kegg lcl|csv:3429357 135 363 + 229 none 100.00 229 88.21 1e-130 cemA ycf10 CsCp052 heme-binding protein
blastp_kegg lcl|mtr:MetrCp046 135 363 + 229 none 100.00 229 81.66 3e-129 cemA envelope membrane protein
blastp_uniprot_sprot sp|Q2L922|CEMA_GOSHI 135 363 + 229 none 100.00 229 89.52 1e-146 Chloroplast envelope membrane protein OS Gossypium hirsutum GN cemA PE 3 SV 1
blastp_uniprot_sprot sp|A0ZZ47|CEMA_GOSBA 135 363 + 229 none 100.00 229 88.65 3e-145 Chloroplast envelope membrane protein OS Gossypium barbadense GN cemA PE 3 SV 1
blastp_uniprot_sprot sp|Q71E53|CEMA_FAGSY 135 363 + 229 none 100.00 229 93.45 3e-142 Chloroplast envelope membrane protein OS Fagus sylvatica GN cemA PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9K7|CEMA_LIRTU 135 363 + 229 none 100.00 229 85.59 8e-141 Chloroplast envelope membrane protein OS Liriodendron tulipifera GN cemA PE 3 SV 1
blastp_uniprot_sprot sp|B1A947|CEMA_CARPA 135 363 + 229 none 100.00 229 84.72 2e-137 Chloroplast envelope membrane protein OS Carica papaya GN cemA PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZJ08|CEMA_VITVI 135 363 + 229 none 100.00 229 89.08 2e-136 Chloroplast envelope membrane protein OS Vitis vinifera GN cemA PE 3 SV 1
blastp_uniprot_sprot sp|Q7YJW1|CEMA_CALFG 135 363 + 229 none 100.00 229 82.97 1e-134 Chloroplast envelope membrane protein OS Calycanthus floridus var. glaucus GN cemA PE 3 SV 1
blastp_uniprot_sprot sp|B1NWG2|CEMA_MANES 134 363 + 230 none 99.57 231 83.04 2e-133 Chloroplast envelope membrane protein OS Manihot esculenta GN cemA PE 3 SV 1
blastp_uniprot_sprot sp|Q2QD77|CEMA_CUCSA 135 363 + 229 none 100.00 229 88.65 3e-133 Chloroplast envelope membrane protein OS Cucumis sativus GN cemA PE 3 SV 1
blastp_uniprot_sprot sp|Q332W6|CEMA_LACSA 135 363 + 229 none 100.00 229 86.46 1e-132 Chloroplast envelope membrane protein OS Lactuca sativa GN cemA PE 3 SV 1
rpsblast_cdd gnl|CDD|176984 104 363 + 260 Gaps:6 99.62 261 77.69 1e-129 CHL00043 cemA envelope membrane protein.
rpsblast_cdd gnl|CDD|145928 135 363 + 229 Gaps:1 100.00 230 62.61 1e-114 pfam03040 CemA CemA family. Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane. A cyanobacterial member of this family has been implicated in CO2 transport but is probably not a CO2 transporter itself. They are predicted to be haem-binding however this has not been proven experimentally.
rpsblast_cdd gnl|CDD|176977 1 131 + 131 Gaps:46 96.20 184 55.37 9e-60 CHL00036 ycf4 photosystem I assembly protein Ycf4.
rpsblast_cdd gnl|CDD|145503 4 131 + 128 Gaps:46 96.67 180 42.53 8e-50 pfam02392 Ycf4 Ycf4. This family consists of hypothetical Ycf4 proteins from various chloroplast genomes. It has been suggested that Ycf4 is involved in the assembly and/or stability of the photosystem I complex in chloroplasts.
rpsblast_cdd gnl|CDD|179436 177 363 + 187 Gaps:2 44.31 422 34.76 3e-36 PRK02507 PRK02507 proton extrusion protein PcxA Provisional.
rpsblast_cdd gnl|CDD|179441 28 131 + 104 none 55.32 188 47.12 5e-30 PRK02542 PRK02542 photosystem I assembly protein Ycf4 Provisional.

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProDom 11 132 122 PD003698 none YCF4 ASSEMBLY I PHOTOSYSTEM CHLOROPLAST PLASTID MEMBRANE PHOTOSYNTHESIS TRANSMEMBRANE THYLAKOID IPR003359
Phobius 344 363 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 140 157 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 28 132 105 PF02392 none Ycf4 IPR003359
Phobius 241 260 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 158 240 83 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Hamap 135 363 229 MF_01308 none envelope membrane protein, chloroplastic [cemA]. IPR004282
Phobius 41 139 99 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 323 343 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 135 363 229 PF03040 none CemA family IPR004282
Phobius 261 322 62 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 20 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 21 40 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

4 Localization

Analysis Start End Length
TMHMM 140 162 22
TMHMM 21 40 19
TMHMM 322 344 22
TMHMM 241 260 19

0 Qtllist

0 Targeting