Protein : Qrob_P0535990.2 Q. robur
Protein Identifier  ? Qrob_P0535990.2 Organism . Name  Quercus robur
Protein Description  (M=7) PF02309//PF02362//PF06507 - AUX/IAA family // B3 DNA binding domain // Auxin response factor Alias (in v1)  Qrob_P0022560.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 714  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0009725 response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100256989 1 713 + 713 Gaps:14 100.00 711 80.17 0.0 auxin response factor 18-like
blastp_kegg lcl|pmum:103343354 1 713 + 713 Gaps:20 100.00 719 77.75 0.0 auxin response factor 18-like
blastp_kegg lcl|pper:PRUPE_ppa002082mg 1 713 + 713 Gaps:16 100.00 719 77.75 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_042067 1 713 + 713 Gaps:11 100.00 716 78.91 0.0 Auxin response factor 10 isoform 1
blastp_kegg lcl|rcu:RCOM_0034710 1 713 + 713 Gaps:20 100.00 709 77.15 0.0 Auxin response factor putative
blastp_kegg lcl|mdm:103423002 1 713 + 713 Gaps:21 100.00 722 75.48 0.0 auxin response factor 18-like
blastp_kegg lcl|cic:CICLE_v10027901mg 1 713 + 713 Gaps:19 100.00 724 75.69 0.0 hypothetical protein
blastp_kegg lcl|pxb:103956759 1 713 + 713 Gaps:18 100.00 723 74.97 0.0 auxin response factor 18
blastp_kegg lcl|mdm:103447892 1 713 + 713 Gaps:36 100.00 711 76.37 0.0 auxin response factor 18
blastp_kegg lcl|cmo:103501953 1 713 + 713 Gaps:11 100.00 716 75.00 0.0 auxin response factor 18
blastp_pdb 1wid_A 112 213 + 102 Gaps:6 80.00 130 36.54 2e-11 mol:protein length:130 DNA-binding protein RAV1
blastp_uniprot_sprot sp|Q653H7|ARFR_ORYSJ 2 687 + 686 Gaps:21 98.14 700 65.21 0.0 Auxin response factor 18 OS Oryza sativa subsp. japonica GN ARF18 PE 2 SV 1
blastp_uniprot_sprot sp|Q9AV47|ARFV_ORYSJ 1 677 + 677 Gaps:46 97.28 698 64.95 0.0 Auxin response factor 22 OS Oryza sativa subsp. japonica GN ARF22 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SKN5|ARFJ_ARATH 3 713 + 711 Gaps:91 99.86 693 65.75 0.0 Auxin response factor 10 OS Arabidopsis thaliana GN ARF10 PE 2 SV 1
blastp_uniprot_sprot sp|Q93YR9|ARFP_ARATH 4 685 + 682 Gaps:43 98.06 670 62.40 0.0 Auxin response factor 16 OS Arabidopsis thaliana GN ARF16 PE 2 SV 1
blastp_uniprot_sprot sp|Q6K223|ARFH_ORYSJ 4 686 + 683 Gaps:60 97.94 681 60.27 0.0 Auxin response factor 8 OS Oryza sativa subsp. japonica GN ARF8 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XKK6|ARFJ_ORYSJ 7 686 + 680 Gaps:65 97.42 699 53.01 0.0 Auxin response factor 10 OS Oryza sativa subsp. japonica GN ARF10 PE 2 SV 3
blastp_uniprot_sprot sp|Q01I35|ARFJ_ORYSI 7 686 + 680 Gaps:65 97.42 699 53.01 0.0 Auxin response factor 10 OS Oryza sativa subsp. indica GN ARF10 PE 3 SV 2
blastp_uniprot_sprot sp|Q84WU6|ARFQ_ARATH 5 585 + 581 Gaps:40 97.95 585 41.36 1e-120 Auxin response factor 17 OS Arabidopsis thaliana GN ARF17 PE 2 SV 1
blastp_uniprot_sprot sp|A3B9A0|ARFP_ORYSJ 5 414 + 410 Gaps:58 34.69 1055 45.90 8e-81 Auxin response factor 16 OS Oryza sativa subsp. japonica GN ARF16 PE 2 SV 1
blastp_uniprot_sprot sp|Q653U3|ARFQ_ORYSJ 3 454 + 452 Gaps:63 43.95 917 44.42 1e-80 Auxin response factor 17 OS Oryza sativa subsp. japonica GN ARF17 PE 2 SV 1
rpsblast_cdd gnl|CDD|191545 279 362 + 84 Gaps:1 100.00 83 54.22 5e-34 pfam06507 Auxin_resp Auxin response factor. A conserved region of auxin-responsive transcription factors.
rpsblast_cdd gnl|CDD|202217 114 215 + 102 Gaps:6 98.97 97 38.54 3e-22 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|198087 114 215 + 102 Gaps:6 100.00 96 39.58 2e-19 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.
rpsblast_cdd gnl|CDD|197383 113 214 + 102 Gaps:7 98.98 98 31.96 6e-17 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 601 679 79 PS51745 none PB1 domain profile. IPR000270
SUPERFAMILY 111 217 107 SSF101936 none none IPR015300
SMART 114 216 103 SM01019 none B3 DNA binding domain IPR003340
PANTHER 5 228 224 PTHR31384:SF6 none none none
PANTHER 5 228 224 PTHR31384 none none none
PANTHER 268 676 409 PTHR31384 none none none
PANTHER 268 676 409 PTHR31384:SF6 none none none
ProSiteProfiles 114 216 103 PS50863 none B3 DNA-binding domain profile. IPR003340
Pfam 279 362 84 PF06507 none Auxin response factor IPR010525
Pfam 552 682 131 PF02309 none AUX/IAA family IPR003311
Gene3D 106 218 113 G3DSA:2.40.330.10 none none IPR015300
Pfam 114 215 102 PF02362 none B3 DNA binding domain IPR003340

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting