| Analysis | rpsblast_cdd | Start | 114 |
| End | 215 | Strand | + |
| Length | 102 | Note | Gaps:6 |
| Hit Coverage | 100.00 | Hit Length | 96 |
| Hit Pident | 39.58 | E Val | 2e-19 |
| Hit Description | smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations. | Hit Pcons | 11.46 |
| Name | Qrob_P0535990.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0535990.2 | Quercus robur | (M=7) PF02309//PF02362//PF06507 - AUX/IAA family // B3 DNA binding domain // Auxin response factor | Qrob_P0022560.1 | manual_v1 |
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