Protein : Qrob_P0534530.2 Q. robur
Protein Identifier  ? Qrob_P0534530.2 Organism . Name  Quercus robur
Score  41.5 Score Type  egn
Protein Description  (M=2) PF00035//PF00636 - Double-stranded RNA binding motif // Ribonuclease III domain Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 396  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0016075 rRNA catabolic process The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0752600 54 395 + 342 Gaps:5 99.71 342 72.73 3e-176 ribonuclease III putative (EC:3.1.26.3)
blastp_kegg lcl|cic:CICLE_v10008694mg 54 395 + 342 Gaps:3 91.62 370 69.32 4e-173 hypothetical protein
blastp_kegg lcl|cit:102617758 54 395 + 342 Gaps:3 91.62 370 69.32 4e-173 ribonuclease 3-like protein 2-like
blastp_kegg lcl|pop:POPTR_0011s08700g 55 395 + 341 Gaps:10 100.00 341 71.55 2e-172 POPTRDRAFT_660602 hypothetical protein
blastp_kegg lcl|tcc:TCM_030826 54 395 + 342 Gaps:4 89.18 379 71.30 4e-172 Ribonuclease 3-like protein 2
blastp_kegg lcl|pmum:103326408 54 395 + 342 Gaps:4 97.14 350 66.47 1e-158 ribonuclease 3-like protein 2
blastp_kegg lcl|pper:PRUPE_ppa007954mg 54 395 + 342 Gaps:4 97.14 350 66.76 2e-158 hypothetical protein
blastp_kegg lcl|cmo:103491097 55 395 + 341 Gaps:3 100.00 338 65.09 3e-158 ribonuclease 3-like protein 2
blastp_kegg lcl|pxb:103951396 54 395 + 342 Gaps:4 96.32 353 66.18 8e-158 ribonuclease 3-like protein 2
blastp_kegg lcl|vvi:100243580 55 394 + 340 Gaps:4 92.31 364 67.56 1e-156 ribonuclease 3-like protein 2-like
blastp_pdb 3c4t_A 53 293 + 241 Gaps:16 95.47 265 28.06 2e-24 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 3c4b_A 53 293 + 241 Gaps:16 95.47 265 28.06 2e-24 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 2eb1_C 53 222 + 170 Gaps:15 91.50 200 28.42 1e-21 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_B 53 222 + 170 Gaps:15 91.50 200 28.42 1e-21 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_A 53 222 + 170 Gaps:15 91.50 200 28.42 1e-21 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 3n3w_B 58 294 + 237 Gaps:53 88.71 248 34.09 4e-16 mol:protein length:248 Ribonuclease III
blastp_pdb 3n3w_A 58 294 + 237 Gaps:53 88.71 248 34.09 4e-16 mol:protein length:248 Ribonuclease III
blastp_pdb 3o2r_D 58 202 + 145 Gaps:26 72.35 170 42.28 1e-15 mol:protein length:170 Ribonuclease III
blastp_pdb 3o2r_B 58 202 + 145 Gaps:26 72.35 170 42.28 1e-15 mol:protein length:170 Ribonuclease III
blastp_pdb 3o2r_C 58 202 + 145 Gaps:26 72.35 170 42.28 1e-15 mol:protein length:170 Ribonuclease III
blastp_uniprot_sprot sp|Q9LTQ0|RTL2_ARATH 14 395 + 382 Gaps:19 95.91 391 54.93 2e-130 Ribonuclease 3-like protein 2 OS Arabidopsis thaliana GN RTL2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6ATG6|RTL2_ORYSJ 50 337 + 288 Gaps:19 91.17 317 51.21 3e-84 Ribonuclease 3-like protein 2 OS Oryza sativa subsp. japonica GN Os05g0271300 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 61 389 + 329 Gaps:14 17.58 1883 39.58 1e-55 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FKF0|RTL3_ARATH 52 392 + 341 Gaps:26 60.92 957 49.06 4e-55 Ribonuclease 3-like protein 3 OS Arabidopsis thaliana GN RTL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q69KJ0|RTL3_ORYSJ 59 297 + 239 Gaps:12 79.26 299 45.15 5e-55 Ribonuclease 3-like protein 3 OS Oryza sativa subsp. japonica GN Os06g0358800 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 62 392 + 331 Gaps:21 18.12 1909 36.42 8e-55 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 62 395 + 334 Gaps:103 33.37 1651 30.85 2e-42 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXW7|DCL3_ARATH 62 345 + 284 Gaps:41 19.94 1580 33.02 2e-37 Endoribonuclease Dicer homolog 3 OS Arabidopsis thaliana GN DCL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q10HL3|DCL2A_ORYSJ 58 290 + 233 Gaps:11 16.74 1410 36.02 5e-34 Endoribonuclease Dicer homolog 2a OS Oryza sativa subsp. japonica GN DCL2A PE 2 SV 1
blastp_uniprot_sprot sp|Q69LX2|DCL2B_ORYSJ 59 292 + 234 Gaps:12 16.85 1377 36.64 3e-33 Endoribonuclease Dicer homolog 2b OS Oryza sativa subsp. japonica GN DCL2B PE 2 SV 2

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 58 223 166 G3DSA:1.10.1520.10 none none IPR000999
SUPERFAMILY 58 152 95 SSF69065 none none IPR000999
SUPERFAMILY 184 224 41 SSF69065 none none IPR000999
PANTHER 21 327 307 PTHR14950 none none none
Pfam 95 202 108 PF00636 none Ribonuclease III domain IPR000999
Hamap 62 290 229 MF_00104 none Ribonuclease 3 [rnc]. IPR011907
Pfam 319 389 71 PF00035 none Double-stranded RNA binding motif IPR014720
Pfam 233 293 61 PF00035 none Double-stranded RNA binding motif IPR014720
PANTHER 21 327 307 PTHR14950:SF18 none none none
SMART 233 294 62 SM00358 none Double-stranded RNA binding motif IPR014720
SMART 319 390 72 SM00358 none Double-stranded RNA binding motif IPR014720
Gene3D 233 294 62 G3DSA:3.30.160.20 none none IPR014720
SUPERFAMILY 318 389 72 SSF54768 none none none
SUPERFAMILY 186 293 108 SSF54768 none none none
ProSitePatterns 95 103 9 PS00517 none Ribonuclease III family signature. IPR000999
ProSiteProfiles 318 391 74 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
ProSiteProfiles 232 295 64 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
Gene3D 320 390 71 G3DSA:3.30.160.20 none none IPR014720
SMART 74 227 154 SM00535 none Ribonuclease III family IPR000999
ProSiteProfiles 59 204 146 PS50142 none Ribonuclease III family domain profile. IPR000999

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting