Protein : Qrob_P0534500.2 Q. robur
Protein Identifier  ? Qrob_P0534500.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0701//KOG1817//KOG3036//KOG3732 - dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]. // Ribonuclease [RNA processing and modification]. // Protein involved in cell differentiation/sexual development [General function prediction only]. // Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking secretion and vesicular transport Transcription]. Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 467  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0016075 rRNA catabolic process The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_030826 39 371 + 333 Gaps:4 86.81 379 73.25 6e-170 Ribonuclease 3-like protein 2
blastp_kegg lcl|cic:CICLE_v10008694mg 4 371 + 368 Gaps:16 97.30 370 66.39 3e-169 hypothetical protein
blastp_kegg lcl|cit:102617758 4 371 + 368 Gaps:16 97.30 370 66.39 3e-169 ribonuclease 3-like protein 2-like
blastp_kegg lcl|pop:POPTR_0011s08700g 40 371 + 332 Gaps:10 97.36 341 71.39 3e-166 POPTRDRAFT_660602 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0752600 42 371 + 330 Gaps:5 96.20 342 70.82 6e-165 ribonuclease III putative (EC:3.1.26.3)
blastp_kegg lcl|vvi:100243580 37 371 + 335 Gaps:4 90.93 364 68.28 2e-155 ribonuclease 3-like protein 2-like
blastp_kegg lcl|pxb:103951396 39 371 + 333 Gaps:4 93.77 353 66.47 4e-153 ribonuclease 3-like protein 2
blastp_kegg lcl|pmum:103326408 37 371 + 335 Gaps:4 95.14 350 65.47 8e-151 ribonuclease 3-like protein 2
blastp_kegg lcl|pper:PRUPE_ppa007954mg 37 371 + 335 Gaps:4 95.14 350 65.47 2e-150 hypothetical protein
blastp_kegg lcl|mdm:103448380 37 371 + 335 Gaps:4 94.33 353 64.26 7e-150 ribonuclease 3-like protein 2
blastp_pdb 3c4t_A 42 278 + 237 Gaps:16 93.96 265 28.92 1e-25 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 3c4b_A 42 278 + 237 Gaps:16 93.96 265 28.92 1e-25 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 2fv2_D 371 462 + 92 none 34.33 268 57.61 3e-25 mol:protein length:268 RCD1 required for cell differentiation1 homol
blastp_pdb 2fv2_C 371 462 + 92 none 34.33 268 57.61 3e-25 mol:protein length:268 RCD1 required for cell differentiation1 homol
blastp_pdb 2fv2_B 371 462 + 92 none 34.33 268 57.61 3e-25 mol:protein length:268 RCD1 required for cell differentiation1 homol
blastp_pdb 2fv2_A 371 462 + 92 none 34.33 268 57.61 3e-25 mol:protein length:268 RCD1 required for cell differentiation1 homol
blastp_pdb 2eb1_C 42 207 + 166 Gaps:13 89.50 200 28.49 4e-23 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_B 42 207 + 166 Gaps:13 89.50 200 28.49 4e-23 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_A 42 207 + 166 Gaps:13 89.50 200 28.49 4e-23 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 3n3w_B 43 279 + 237 Gaps:53 88.71 248 34.09 4e-16 mol:protein length:248 Ribonuclease III
blastp_uniprot_sprot sp|Q9LTQ0|RTL2_ARATH 25 371 + 347 Gaps:10 87.21 391 56.01 8e-124 Ribonuclease 3-like protein 2 OS Arabidopsis thaliana GN RTL2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6ATG6|RTL2_ORYSJ 29 322 + 294 Gaps:22 92.11 317 53.42 5e-86 Ribonuclease 3-like protein 2 OS Oryza sativa subsp. japonica GN Os05g0271300 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FKF0|RTL3_ARATH 37 371 + 335 Gaps:78 72.20 957 42.69 7e-69 Ribonuclease 3-like protein 3 OS Arabidopsis thaliana GN RTL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 41 371 + 331 Gaps:15 17.95 1883 39.05 2e-59 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 46 371 + 326 Gaps:59 26.82 1909 34.18 9e-56 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
blastp_uniprot_sprot sp|Q69KJ0|RTL3_ORYSJ 42 282 + 241 Gaps:6 79.93 299 42.26 2e-52 Ribonuclease 3-like protein 3 OS Oryza sativa subsp. japonica GN Os06g0358800 PE 2 SV 1
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 47 373 + 327 Gaps:78 28.71 1651 32.70 5e-42 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXW7|DCL3_ARATH 41 330 + 290 Gaps:41 20.32 1580 32.71 6e-39 Endoribonuclease Dicer homolog 3 OS Arabidopsis thaliana GN DCL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q10HL3|DCL2A_ORYSJ 43 248 + 206 Gaps:6 14.47 1410 36.27 8e-34 Endoribonuclease Dicer homolog 2a OS Oryza sativa subsp. japonica GN DCL2A PE 2 SV 1
blastp_uniprot_sprot sp|Q69LX2|DCL2B_ORYSJ 44 248 + 205 Gaps:9 14.52 1377 37.00 4e-32 Endoribonuclease Dicer homolog 2b OS Oryza sativa subsp. japonica GN DCL2B PE 2 SV 2

25 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Hamap 47 370 324 MF_00104 none Ribonuclease 3 [rnc]. IPR011907
Pfam 367 462 96 PF04078 none Cell differentiation family, Rcd1-like IPR007216
ProSiteProfiles 44 189 146 PS50142 none Ribonuclease III family domain profile. IPR000999
SUPERFAMILY 171 278 108 SSF54768 none none none
Gene3D 305 370 66 G3DSA:3.30.160.20 none none IPR014720
PANTHER 18 312 295 PTHR14950:SF18 none none none
Gene3D 43 208 166 G3DSA:1.10.1520.10 none none IPR000999
Pfam 218 278 61 PF00035 none Double-stranded RNA binding motif IPR014720
Pfam 304 371 68 PF00035 none Double-stranded RNA binding motif IPR014720
Gene3D 220 279 60 G3DSA:3.30.160.20 none none IPR014720
Phobius 7 17 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 18 312 295 PTHR14950 none none none
SMART 218 279 62 SM00358 none Double-stranded RNA binding motif IPR014720
SMART 304 375 72 SM00358 none Double-stranded RNA binding motif IPR014720
ProSitePatterns 80 88 9 PS00517 none Ribonuclease III family signature. IPR000999
Phobius 1 35 35 SIGNAL_PEPTIDE none Signal peptide region none
SMART 59 212 154 SM00535 none Ribonuclease III family IPR000999
ProSiteProfiles 217 280 64 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
Phobius 36 466 431 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 303 377 75 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 303 373 71 SSF54768 none none none
Pfam 80 187 108 PF00636 none Ribonuclease III domain IPR000999
SUPERFAMILY 42 209 168 SSF69065 none none IPR000999
Phobius 18 35 18 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 35 34

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting