Protein : Qrob_P0444570.2 Q. robur
Protein Identifier  ? Qrob_P0444570.2 Organism . Name  Quercus robur
Score  96.1 Score Type  egn
Protein Description  (M=1) K04482 - DNA repair protein RAD51 Code Enzyme  EC:3.6.1.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 367  
Kegg Orthology  K04482
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

11 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0008094 DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
GO:0006259 DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO:0000724 double-strand break repair via homologous recombination The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
GO:0003697 single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
GO:0000150 recombinase activity Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA.
GO:1990426 homologous recombination-dependent replication fork processing Replication fork processing that includes recombination between DNA near the arrested fork and homologous sequences. Proteins involved in homologous recombination are required for replication restart.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103340506 1 366 + 366 Gaps:26 100.00 340 93.24 0.0 DNA repair protein RAD51 homolog
blastp_kegg lcl|pper:PRUPE_ppa008236mg 1 366 + 366 Gaps:26 100.00 340 93.24 0.0 hypothetical protein
blastp_kegg lcl|mdm:103400890 1 366 + 366 Gaps:26 100.00 340 92.35 0.0 DNA repair protein RAD51 homolog
blastp_kegg lcl|pda:103714830 2 366 + 365 Gaps:26 99.12 342 92.63 0.0 DNA repair protein RAD51 homolog
blastp_kegg lcl|pda:103702594 2 366 + 365 Gaps:26 99.12 342 92.63 0.0 DNA repair protein RAD51 homolog
blastp_kegg lcl|pxb:103950220 1 366 + 366 Gaps:26 100.00 340 92.06 0.0 DNA repair protein RAD51 homolog
blastp_kegg lcl|vvi:100252629 1 366 + 366 Gaps:29 100.00 337 92.88 0.0 DNA repair protein RAD51 homolog-like
blastp_kegg lcl|cmo:103492402 1 366 + 366 Gaps:26 100.00 340 92.06 0.0 DNA repair protein RAD51 homolog
blastp_kegg lcl|csv:101214733 1 366 + 366 Gaps:26 100.00 340 92.06 0.0 DNA repair protein RAD51 homolog
blastp_kegg lcl|fve:101309285 13 366 + 354 Gaps:22 99.70 337 91.96 0.0 DNA repair protein RAD51 homolog 1-like
blastp_pdb 1n0w_A 125 366 + 242 none 99.59 243 77.69 2e-140 mol:protein length:243 DNA repair protein RAD51 homolog 1
blastp_pdb 3lda_A 11 366 + 356 Gaps:21 84.25 400 63.20 3e-139 mol:protein length:400 DNA repair protein RAD51
blastp_pdb 1szp_F 31 366 + 336 Gaps:20 98.44 321 65.82 3e-139 mol:protein length:321 DNA repair protein RAD51
blastp_pdb 1szp_E 31 366 + 336 Gaps:20 98.44 321 65.82 3e-139 mol:protein length:321 DNA repair protein RAD51
blastp_pdb 1szp_D 31 366 + 336 Gaps:20 98.44 321 65.82 3e-139 mol:protein length:321 DNA repair protein RAD51
blastp_pdb 1szp_C 31 366 + 336 Gaps:20 98.44 321 65.82 3e-139 mol:protein length:321 DNA repair protein RAD51
blastp_pdb 1szp_B 31 366 + 336 Gaps:20 98.44 321 65.82 3e-139 mol:protein length:321 DNA repair protein RAD51
blastp_pdb 1szp_A 31 366 + 336 Gaps:20 98.44 321 65.82 3e-139 mol:protein length:321 DNA repair protein RAD51
blastp_pdb 1v5w_B 32 366 + 335 Gaps:22 92.42 343 51.10 1e-101 mol:protein length:343 Meiotic recombination protein DMC1/LIM15 homo
blastp_pdb 1v5w_A 32 366 + 335 Gaps:22 92.42 343 51.10 1e-101 mol:protein length:343 Meiotic recombination protein DMC1/LIM15 homo
blastp_uniprot_sprot sp|Q40134|RAD51_SOLLC 1 366 + 366 Gaps:24 100.00 342 89.47 0.0 DNA repair protein RAD51 homolog OS Solanum lycopersicum GN RAD51 PE 2 SV 1
blastp_uniprot_sprot sp|P94102|RAD51_ARATH 1 366 + 366 Gaps:27 99.12 342 89.38 0.0 DNA repair protein RAD51 homolog 1 OS Arabidopsis thaliana GN RAD51 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XED7|R51A2_MAIZE 9 366 + 358 Gaps:22 100.00 340 86.76 0.0 DNA repair protein RAD51 homolog B OS Zea mays GN RAD51B PE 2 SV 1
blastp_uniprot_sprot sp|Q67EU8|R51A1_MAIZE 25 366 + 342 Gaps:20 94.71 340 88.51 0.0 DNA repair protein RAD51 homolog A OS Zea mays GN RAD51A PE 2 SV 2
blastp_uniprot_sprot sp|Q06609|RAD51_HUMAN 22 366 + 345 Gaps:20 95.87 339 72.00 7e-172 DNA repair protein RAD51 homolog 1 OS Homo sapiens GN RAD51 PE 1 SV 1
blastp_uniprot_sprot sp|Q2KJ94|RAD51_BOVIN 22 366 + 345 Gaps:20 95.87 339 71.69 4e-171 DNA repair protein RAD51 homolog 1 OS Bos taurus GN RAD51 PE 2 SV 1
blastp_uniprot_sprot sp|Q8MKI8|RAD51_CANFA 22 366 + 345 Gaps:20 95.87 339 71.69 4e-171 DNA repair protein RAD51 homolog 1 OS Canis familiaris GN RAD51 PE 2 SV 1
blastp_uniprot_sprot sp|Q08297|RAD51_MOUSE 22 366 + 345 Gaps:20 95.87 339 71.69 5e-171 DNA repair protein RAD51 homolog 1 OS Mus musculus GN Rad51 PE 1 SV 1
blastp_uniprot_sprot sp|P70099|RAD51_CRIGR 22 366 + 345 Gaps:20 95.87 339 71.69 5e-171 DNA repair protein RAD51 homolog 1 OS Cricetulus griseus GN RAD51 PE 2 SV 1
blastp_uniprot_sprot sp|Q91917|RA51B_XENLA 14 366 + 353 Gaps:20 99.11 336 70.57 1e-170 DNA repair protein RAD51 homolog B OS Xenopus laevis GN rad51-b PE 2 SV 1

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 128 364 237 SSF52540 none none IPR027417
Phobius 105 366 262 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 80 80 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PIRSF 14 366 353 PIRSF005856 none none IPR016467
Gene3D 13 84 72 G3DSA:1.10.150.20 none none none
SUPERFAMILY 25 84 60 SSF47794 none none IPR010995
Coils 1 22 22 Coil none none none
SMART 146 333 188 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Gene3D 126 365 240 G3DSA:3.40.50.300 none none IPR027417
PANTHER 112 366 255 PTHR22942:SF30 none none none
Phobius 81 104 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 3 92 90 PTHR22942:SF30 none none none
PANTHER 3 92 90 PTHR22942 none none none
ProSiteProfiles 303 366 64 PS50163 none RecA family profile 2. IPR020587
Pfam 111 365 255 PF08423 none Rad51 IPR013632
Pfam 38 84 47 PF14520 none Helix-hairpin-helix domain none
TIGRFAM 101 366 266 TIGR02239 none recomb_RAD51: DNA repair protein RAD51 IPR011941
ProSiteProfiles 125 296 172 PS50162 none RecA family profile 1. IPR020588
PANTHER 112 366 255 PTHR22942 none none none

1 Localization

Analysis Start End Length
TMHMM 81 103 22

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting