Protein : Qrob_P0439750.2 Q. robur
Protein Identifier  ? Qrob_P0439750.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=2) K10746 - exonuclease 1 [EC:3.1.-.-] Code Enzyme  EC:3.1.11.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 418  
Kegg Orthology  K10746
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0004518 nuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO:0016788 hydrolase activity, acting on ester bonds Catalysis of the hydrolysis of any ester bond.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100262876 1 415 + 415 Gaps:13 74.31 541 75.87 0.0 exonuclease 1-like
blastp_kegg lcl|pper:PRUPE_ppa020678mg 1 411 + 411 Gaps:15 68.75 576 76.01 0.0 hypothetical protein
blastp_kegg lcl|pmum:103338814 1 411 + 411 Gaps:13 68.86 578 74.87 0.0 exonuclease 1
blastp_kegg lcl|mdm:103431241 1 408 + 408 Gaps:13 68.10 580 74.68 0.0 exonuclease 1-like
blastp_kegg lcl|mdm:103424609 1 408 + 408 Gaps:13 68.10 580 74.68 0.0 exonuclease 1-like
blastp_kegg lcl|pxb:103950591 1 406 + 406 Gaps:13 68.71 572 75.06 0.0 exonuclease 1
blastp_kegg lcl|fve:101295920 1 408 + 408 Gaps:15 68.69 578 73.30 0.0 exonuclease 1-like
blastp_kegg lcl|cic:CICLE_v10007863mg 1 406 + 406 Gaps:17 68.25 570 74.29 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0570820 1 415 + 415 Gaps:14 69.62 576 71.82 0.0 exonuclease putative
blastp_kegg lcl|sot:102579493 1 407 + 407 Gaps:14 72.61 544 69.11 0.0 exonuclease 1-like
blastp_pdb 3qeb_Z 1 363 + 363 Gaps:40 96.88 352 42.23 9e-66 mol:protein length:352 Exonuclease 1
blastp_pdb 3qea_Z 1 363 + 363 Gaps:40 96.88 352 42.23 9e-66 mol:protein length:352 Exonuclease 1
blastp_pdb 3qe9_Z 1 363 + 363 Gaps:40 96.88 352 41.94 1e-64 mol:protein length:352 Exonuclease 1
blastp_pdb 3qe9_Y 1 363 + 363 Gaps:40 96.88 352 41.94 1e-64 mol:protein length:352 Exonuclease 1
blastp_pdb 3q8l_A 19 331 + 313 Gaps:25 86.22 341 26.87 2e-16 mol:protein length:341 Flap endonuclease 1
blastp_pdb 3q8k_A 19 331 + 313 Gaps:25 86.22 341 26.87 2e-16 mol:protein length:341 Flap endonuclease 1
blastp_pdb 1ul1_Z 19 331 + 313 Gaps:33 77.57 379 26.19 3e-16 mol:protein length:379 Flap endonuclease-1
blastp_pdb 1ul1_Y 19 331 + 313 Gaps:33 77.57 379 26.19 3e-16 mol:protein length:379 Flap endonuclease-1
blastp_pdb 1ul1_X 19 331 + 313 Gaps:33 77.57 379 26.19 3e-16 mol:protein length:379 Flap endonuclease-1
blastp_pdb 3q8m_B 19 331 + 313 Gaps:25 86.22 341 26.53 1e-15 mol:protein length:341 Flap endonuclease 1
blastp_uniprot_sprot sp|Q8L6Z7|EXO1_ARATH 1 360 + 360 Gaps:37 45.31 735 46.25 8e-87 Exonuclease 1 OS Arabidopsis thaliana GN EXO1 PE 2 SV 2
blastp_uniprot_sprot sp|Q60GC1|EXO1_ORYSJ 1 361 + 361 Gaps:27 39.95 836 43.71 3e-85 Exonuclease 1 OS Oryza sativa subsp. japonica GN EXO1 PE 2 SV 1
blastp_uniprot_sprot sp|Q54ED2|EXO1_DICDI 1 361 + 361 Gaps:46 34.89 1046 41.37 5e-75 Exonuclease 1 OS Dictyostelium discoideum GN exo1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9W6K2|EXO1_XENLA 1 363 + 363 Gaps:50 46.46 734 42.52 4e-68 Exonuclease 1 OS Xenopus laevis GN exo1 PE 2 SV 1
blastp_uniprot_sprot sp|P53695|EXO1_SCHPO 1 361 + 361 Gaps:28 58.67 571 40.00 1e-66 Exodeoxyribonuclease 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN exo1 PE 1 SV 1
blastp_uniprot_sprot sp|Q803U7|EXO1_DANRE 1 397 + 397 Gaps:36 46.53 806 38.67 4e-66 Exonuclease 1 OS Danio rerio GN exo1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9UQ84|EXO1_HUMAN 1 390 + 390 Gaps:57 45.51 846 40.00 3e-62 Exonuclease 1 OS Homo sapiens GN EXO1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9QZ11|EXO1_MOUSE 1 363 + 363 Gaps:52 40.74 837 39.88 1e-57 Exonuclease 1 OS Mus musculus GN Exo1 PE 2 SV 2
blastp_uniprot_sprot sp|P39875|EXO1_YEAST 1 318 + 318 Gaps:18 42.74 702 34.67 1e-53 Exodeoxyribonuclease 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN EXO1 PE 1 SV 2
blastp_uniprot_sprot sp|Q24558|EXO1_DROME 1 378 + 378 Gaps:36 49.18 732 34.17 4e-51 Exonuclease 1 OS Drosophila melanogaster GN tos PE 1 SV 1

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 97 96 PTHR11081 none none IPR006084
Gene3D 1 212 212 G3DSA:3.40.50.1010 none none IPR029060
PANTHER 113 363 251 PTHR11081 none none IPR006084
Pfam 1 97 97 PF00752 none XPG N-terminal domain IPR006085
ProSiteProfiles 109 142 34 PS50005 none TPR repeat profile. IPR019734
Pfam 152 245 94 PF00867 none XPG I-region IPR006086
PRINTS 76 95 20 PR00853 none Xeroderma pigmentosum group G/yeast RAD superfamily signature IPR006084
PRINTS 24 38 15 PR00853 none Xeroderma pigmentosum group G/yeast RAD superfamily signature IPR006084
PRINTS 150 167 18 PR00853 none Xeroderma pigmentosum group G/yeast RAD superfamily signature IPR006084
PRINTS 235 250 16 PR00853 none Xeroderma pigmentosum group G/yeast RAD superfamily signature IPR006084
ProSiteProfiles 109 142 34 PS50293 none TPR repeat region circular profile. IPR013026
SUPERFAMILY 230 365 136 SSF47807 none none IPR020045
PANTHER 2 97 96 PTHR11081:SF8 none none none
PANTHER 113 363 251 PTHR11081:SF8 none none none
SMART 1 111 111 SM00485 none Xeroderma pigmentosum G N-region IPR006085
SMART 151 227 77 SM00484 none Xeroderma pigmentosum G I-region IPR006086
Gene3D 230 286 57 G3DSA:1.10.150.20 none none none
SUPERFAMILY 2 245 244 SSF88723 none none IPR029060
SMART 232 265 34 SM00279 none Helix-hairpin-helix class 2 (Pol1 family) motifs IPR008918
ProSitePatterns 154 168 15 PS00842 none XPG protein signature 2. IPR019974

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting