Protein : Qrob_P0427280.2 Q. robur
Protein Identifier  ? Qrob_P0427280.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K00026 - malate dehydrogenase [EC:1.1.1.37] Code Enzyme  EC:1.1.1.37
Gene Prediction Quality  validated Protein length 

Sequence

Length: 351  
Kegg Orthology  K00026
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0 Synonyms

9 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO:0006108 malate metabolic process The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
GO:0030060 L-malate dehydrogenase activity Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+.
GO:0016615 malate dehydrogenase activity Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate.
GO:0019752 carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sot:102601823 1 350 + 350 Gaps:4 100.00 346 87.28 0.0 mMDH malate dehydrogenase mitochondrial-like
blastp_kegg lcl|sly:778285 1 350 + 350 Gaps:4 100.00 346 87.28 0.0 mMDH mitochondrial malate dehydrogenase (EC:1.1.1.37)
blastp_kegg lcl|gmx:100777296 1 349 + 349 Gaps:5 99.71 345 87.79 0.0 malate dehydrogenase mitochondrial-like
blastp_kegg lcl|cam:101499744 1 349 + 349 Gaps:6 100.00 345 87.25 0.0 malate dehydrogenase mitochondrial-like
blastp_kegg lcl|gmx:606509 1 349 + 349 Gaps:5 99.71 345 87.50 0.0 MDH-1 Mdh1 malate dehydrogenase
blastp_kegg lcl|pop:POPTR_0011s09860g 15 349 + 335 none 98.24 341 88.66 0.0 POPTRDRAFT_822907 Malate dehydrogenase family protein
blastp_kegg lcl|rcu:RCOM_1520380 1 349 + 349 Gaps:4 100.00 345 86.96 0.0 malate dehydrogenase putative (EC:1.1.1.37)
blastp_kegg lcl|pvu:PHAVU_011G159000g 1 349 + 349 Gaps:5 99.71 345 86.34 0.0 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_474449 10 349 + 340 Gaps:1 99.41 341 86.14 0.0 mitochondrial malate dehydrogenase
blastp_kegg lcl|pop:POPTR_0001s38560g 1 349 + 349 Gaps:5 100.00 344 86.63 0.0 POPTRDRAFT_707785 Malate dehydrogenase family protein
blastp_pdb 1smk_H 36 346 + 311 none 95.40 326 67.20 2e-148 mol:protein length:326 Malate dehydrogenase glyoxysomal
blastp_pdb 1smk_G 36 346 + 311 none 95.40 326 67.20 2e-148 mol:protein length:326 Malate dehydrogenase glyoxysomal
blastp_pdb 1smk_F 36 346 + 311 none 95.40 326 67.20 2e-148 mol:protein length:326 Malate dehydrogenase glyoxysomal
blastp_pdb 1smk_E 36 346 + 311 none 95.40 326 67.20 2e-148 mol:protein length:326 Malate dehydrogenase glyoxysomal
blastp_pdb 1smk_D 36 346 + 311 none 95.40 326 67.20 2e-148 mol:protein length:326 Malate dehydrogenase glyoxysomal
blastp_pdb 1smk_C 36 346 + 311 none 95.40 326 67.20 2e-148 mol:protein length:326 Malate dehydrogenase glyoxysomal
blastp_pdb 1smk_B 36 346 + 311 none 95.40 326 67.20 2e-148 mol:protein length:326 Malate dehydrogenase glyoxysomal
blastp_pdb 1smk_A 36 346 + 311 none 95.40 326 67.20 2e-148 mol:protein length:326 Malate dehydrogenase glyoxysomal
blastp_pdb 1sev_B 15 346 + 332 none 91.71 362 63.86 2e-148 mol:protein length:362 Malate dehydrogenase glyoxysomal precursor
blastp_pdb 1sev_A 15 346 + 332 none 91.71 362 63.86 2e-148 mol:protein length:362 Malate dehydrogenase glyoxysomal precursor
blastp_uniprot_sprot sp|Q9ZP06|MDHM1_ARATH 10 349 + 340 Gaps:1 99.41 341 85.25 0.0 Malate dehydrogenase 1 mitochondrial OS Arabidopsis thaliana GN At1g53240 PE 1 SV 1
blastp_uniprot_sprot sp|P83373|MDHM_FRAAN 4 350 + 347 Gaps:13 98.53 339 88.92 0.0 Malate dehydrogenase mitochondrial OS Fragaria ananassa GN MMDHI PE 1 SV 1
blastp_uniprot_sprot sp|P17783|MDHM_CITLA 30 348 + 319 none 91.93 347 89.97 0.0 Malate dehydrogenase mitochondrial OS Citrullus lanatus GN MMDH PE 1 SV 1
blastp_uniprot_sprot sp|Q9LKA3|MDHM2_ARATH 10 349 + 340 Gaps:1 99.41 341 83.19 0.0 Malate dehydrogenase 2 mitochondrial OS Arabidopsis thaliana GN At3g15020 PE 1 SV 1
blastp_uniprot_sprot sp|P46487|MDHM_EUCGU 1 349 + 349 Gaps:4 100.00 347 84.73 0.0 Malate dehydrogenase mitochondrial OS Eucalyptus gunnii GN MDH PE 2 SV 1
blastp_uniprot_sprot sp|Q43744|MDHM_BRANA 10 349 + 340 Gaps:1 99.41 341 81.71 0.0 Malate dehydrogenase mitochondrial OS Brassica napus GN MDH PE 2 SV 1
blastp_uniprot_sprot sp|Q42686|MDHM_CHLRE 38 346 + 309 Gaps:2 82.31 373 71.99 4e-159 Malate dehydrogenase mitochondrial OS Chlamydomonas reinhardtii PE 1 SV 1
blastp_uniprot_sprot sp|Q42972|MDHG_ORYSJ 34 349 + 316 none 88.76 356 68.04 6e-151 Malate dehydrogenase glyoxysomal OS Oryza sativa subsp. japonica GN Os12g0632700 PE 1 SV 3
blastp_uniprot_sprot sp|P37228|MDHG_SOYBN 11 349 + 339 Gaps:3 96.88 353 64.33 4e-148 Malate dehydrogenase glyoxysomal OS Glycine max PE 2 SV 2
blastp_uniprot_sprot sp|P19446|MDHG_CITLA 15 346 + 332 none 93.26 356 63.86 7e-148 Malate dehydrogenase glyoxysomal OS Citrullus lanatus PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 182 194 13 PS00068 "KEGG:00020+1.1.1.37","KEGG:00270+1.1.1.37","KEGG:00620+1.1.1.37","KEGG:00630+1.1.1.37","KEGG:00680+1.1.1.37","KEGG:00710+1.1.1.37","KEGG:00720+1.1.1.37","MetaCyc:PWY-1622","MetaCyc:PWY-5392","MetaCyc:PWY-561","MetaCyc:PWY-5690","MetaCyc:PWY-5913","MetaCyc:PWY-6728","MetaCyc:PWY-6969","MetaCyc:PWY-7115","MetaCyc:PWY-7383","Reactome:REACT_474" Malate dehydrogenase active site signature. IPR001252
Pfam 39 181 143 PF00056 none lactate/malate dehydrogenase, NAD binding domain IPR001236
SUPERFAMILY 39 181 143 SSF51735 none none none
SUPERFAMILY 182 348 167 SSF56327 none none IPR015955
PANTHER 10 350 341 PTHR11540:SF9 none none none
PIRSF 34 348 315 PIRSF000102 none none IPR001557
TIGRFAM 39 348 310 TIGR01772 "KEGG:00020+1.1.1.37","KEGG:00270+1.1.1.37","KEGG:00620+1.1.1.37","KEGG:00630+1.1.1.37","KEGG:00680+1.1.1.37","KEGG:00710+1.1.1.37","KEGG:00720+1.1.1.37","MetaCyc:PWY-1622","MetaCyc:PWY-5392","MetaCyc:PWY-561","MetaCyc:PWY-5690","MetaCyc:PWY-5913","MetaCyc:PWY-6728","MetaCyc:PWY-6969","MetaCyc:PWY-7115","MetaCyc:PWY-7383" MDH_euk_gproteo: malate dehydrogenase, NAD-dependent IPR010097
Pfam 183 346 164 PF02866 none lactate/malate dehydrogenase, alpha/beta C-terminal domain IPR022383
Gene3D 39 182 144 G3DSA:3.40.50.720 none none IPR016040
Gene3D 183 348 166 G3DSA:3.90.110.10 none none IPR015955
PANTHER 10 350 341 PTHR11540 none none IPR001557

0 Localization

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting