Protein : Qrob_P0384230.2 Q. robur
Protein Identifier  ? Qrob_P0384230.2 Organism . Name  Quercus robur
Score  74.0 Score Type  egn
Protein Description  (M=1) K02470 - DNA gyrase subunit B [EC:5.99.1.3] Code Enzyme  EC:5.99.1.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 693  
Kegg Orthology  K02470
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO:0005694 chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100241769 11 692 + 682 Gaps:2 95.13 719 87.87 0.0 DNA gyrase subunit B chloroplastic/mitochondrial-like
blastp_kegg lcl|rcu:RCOM_0692980 20 692 + 673 Gaps:1 92.08 732 87.39 0.0 DNA gyrase subunit B putative (EC:5.99.1.3)
blastp_kegg lcl|pop:POPTR_0006s03770g 11 692 + 682 Gaps:2 93.32 733 85.96 0.0 POPTRDRAFT_416717 hypothetical protein
blastp_kegg lcl|pmum:103339188 4 692 + 689 Gaps:2 93.63 738 88.28 0.0 DNA gyrase subunit B chloroplastic/mitochondrial
blastp_kegg lcl|sot:102597444 1 692 + 692 Gaps:2 95.20 729 87.75 0.0 DNA gyrase subunit B chloroplastic/mitochondrial-like
blastp_kegg lcl|sly:101250576 6 692 + 687 Gaps:2 94.51 729 88.53 0.0 DNA gyrase subunit B chloroplastic/mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa001942mg 4 692 + 689 Gaps:2 93.63 738 87.70 0.0 hypothetical protein
blastp_kegg lcl|gmx:100779534 11 692 + 682 Gaps:3 94.35 726 84.82 0.0 DNA gyrase subunit B chloroplastic/mitochondrial-like
blastp_kegg lcl|pop:POPTR_0016s03560g 11 692 + 682 Gaps:10 93.63 722 86.09 0.0 POPTRDRAFT_576166 DNA topoisomerase 2 family protein
blastp_kegg lcl|pvu:PHAVU_001G123100g 19 692 + 674 Gaps:2 93.09 724 85.76 0.0 hypothetical protein
blastp_pdb 1ei1_B 56 432 + 377 Gaps:13 94.12 391 47.55 6e-105 mol:protein length:391 DNA GYRASE B
blastp_pdb 1ei1_A 56 432 + 377 Gaps:13 94.12 391 47.55 6e-105 mol:protein length:391 DNA GYRASE B
blastp_pdb 1kij_B 50 447 + 398 Gaps:11 99.74 390 43.44 4e-83 mol:protein length:390 DNA GYRASE SUBUNIT B
blastp_pdb 1kij_A 50 447 + 398 Gaps:11 99.74 390 43.44 4e-83 mol:protein length:390 DNA GYRASE SUBUNIT B
blastp_pdb 2xcq_A 456 688 + 233 Gaps:1 31.96 726 57.76 9e-82 mol:protein length:726 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_pdb 2xco_A 456 688 + 233 Gaps:1 31.96 726 57.76 9e-82 mol:protein length:726 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_pdb 2xcr_U 456 688 + 233 Gaps:1 31.96 726 57.76 1e-81 mol:protein length:726 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_pdb 2xcr_S 456 688 + 233 Gaps:1 31.96 726 57.76 1e-81 mol:protein length:726 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_pdb 2xcr_D 456 688 + 233 Gaps:1 31.96 726 57.76 1e-81 mol:protein length:726 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_pdb 2xcr_B 456 688 + 233 Gaps:1 31.96 726 57.76 1e-81 mol:protein length:726 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_uniprot_sprot sp|Q5YLB4|GYRB_NICBE 11 692 + 682 Gaps:2 93.57 731 88.01 0.0 DNA gyrase subunit B chloroplastic/mitochondrial OS Nicotiana benthamiana GN GYRB PE 2 SV 1
blastp_uniprot_sprot sp|Q94BZ7|GYRBM_ARATH 22 692 + 671 Gaps:4 91.12 732 83.51 0.0 DNA gyrase subunit B mitochondrial OS Arabidopsis thaliana GN GYRBM PE 2 SV 1
blastp_uniprot_sprot sp|Q9SS38|GYRBP_ARATH 22 692 + 671 Gaps:1 91.78 730 84.18 0.0 DNA gyrase subunit B chloroplastic OS Arabidopsis thaliana GN GYRBC PE 2 SV 3
blastp_uniprot_sprot sp|Q5NBJ3|GYRB_ORYSJ 26 692 + 667 Gaps:2 91.50 729 78.86 0.0 DNA gyrase subunit B chloroplastic/mitochondrial OS Oryza sativa subsp. japonica GN GYRB PE 2 SV 1
blastp_uniprot_sprot sp|P77993|GYRB_THEMA 51 692 + 642 Gaps:31 99.53 636 53.24 0.0 DNA gyrase subunit B OS Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN gyrB PE 3 SV 2
blastp_uniprot_sprot sp|P94604|GYRB_CLOAB 45 688 + 644 Gaps:27 99.69 637 53.54 0.0 DNA gyrase subunit B OS Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN gyrB PE 3 SV 2
blastp_uniprot_sprot sp|P05652|GYRB_BACSU 50 692 + 643 Gaps:13 99.06 638 52.22 0.0 DNA gyrase subunit B OS Bacillus subtilis (strain 168) GN gyrB PE 3 SV 1
blastp_uniprot_sprot sp|O50627|GYRB_BACHD 49 692 + 644 Gaps:18 99.22 637 52.69 0.0 DNA gyrase subunit B OS Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN gyrB PE 3 SV 1
blastp_uniprot_sprot sp|Q8CQK4|GYRB_STAES 51 688 + 638 Gaps:15 97.82 643 54.05 0.0 DNA gyrase subunit B OS Staphylococcus epidermidis (strain ATCC 12228) GN gyrB PE 3 SV 1
blastp_uniprot_sprot sp|Q5HK03|GYRB_STAEQ 51 688 + 638 Gaps:15 97.82 643 54.05 0.0 DNA gyrase subunit B OS Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN gyrB PE 3 SV 1

36 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 76 226 151 SM00387 none Histidine kinase-like ATPases IPR003594
PANTHER 23 692 670 PTHR10169:SF35 none none none
PRINTS 80 95 16 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 622 638 17 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 475 489 15 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 160 174 15 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 560 577 18 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 580 592 13 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 323 336 14 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 115 128 14 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 542 558 17 PR00418 none DNA topoisomerase II family signature IPR001241
Pfam 80 224 145 PF02518 none Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594
ProSitePatterns 477 485 9 PS00177 none DNA topoisomerase II signature. IPR018522
SMART 80 683 604 SM00433 none TopoisomeraseII IPR001241
PRINTS 232 247 16 PR01159 none DNA gyrase subunit B signature IPR000565
PRINTS 415 429 15 PR01159 none DNA gyrase subunit B signature IPR000565
PRINTS 275 297 23 PR01159 none DNA gyrase subunit B signature IPR000565
PRINTS 367 383 17 PR01159 none DNA gyrase subunit B signature IPR000565
PRINTS 429 449 21 PR01159 none DNA gyrase subunit B signature IPR000565
PRINTS 643 655 13 PR01159 none DNA gyrase subunit B signature IPR000565
PRINTS 51 61 11 PR01159 none DNA gyrase subunit B signature IPR000565
PRINTS 525 534 10 PR01159 none DNA gyrase subunit B signature IPR000565
PRINTS 247 260 14 PR01159 none DNA gyrase subunit B signature IPR000565
PRINTS 659 675 17 PR01159 none DNA gyrase subunit B signature IPR000565
Gene3D 275 446 172 G3DSA:3.30.230.10 none none IPR014721
Gene3D 51 266 216 G3DSA:3.30.565.10 none none IPR003594
PANTHER 23 692 670 PTHR10169 none none none
SUPERFAMILY 276 446 171 SSF54211 none none IPR020568
ProSiteProfiles 473 580 108 PS50880 none Toprim domain profile. IPR006171
Gene3D 459 671 213 G3DSA:3.40.50.670 none none IPR013759

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 27 26

0 Qtllist

0 Targeting