Protein : Qrob_P0369440.2 Q. robur
Protein Identifier  ? Qrob_P0369440.2 Organism . Name  Quercus robur
Score  15.7 Score Type  egn
Protein Description  (M=5) K06636 - structural maintenance of chromosome 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 347  
Kegg Orthology  K06636
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003682 chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
GO:0007064 mitotic sister chromatid cohesion The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle. This cohesion cycle is critical for high fidelity chromosome transmission.
GO:0008278 cohesin complex A protein complex that is required for sister chromatid cohesion in eukaryotes. The cohesin complex forms a molecular ring complex, and is composed of structural maintenance of chromosomes (SMC) and kleisin proteins. For example, in yeast, the complex is composed of the SMC proteins Smc1p and Smc3p, and the kleisin protein Scc1p. In vertebrates, the complex is composed of the SMC1 (SMC1A or SMC1B) and SMC3 heterodimer attached via their hinge domains to a kleisin (RAD21, REC8 or RAD21L) which links them, and one STAG protein (STAG1, STAG2 or STAG3).

46 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103334475 9 346 + 338 Gaps:1 27.83 1218 85.25 0.0 structural maintenance of chromosomes protein 1
blastp_kegg lcl|pper:PRUPE_ppa000396mg 9 346 + 338 Gaps:1 28.04 1209 85.25 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0499140 9 346 + 338 Gaps:1 27.79 1220 83.78 0.0 Structural maintenance of chromosome 1 protein putative
blastp_kegg lcl|cic:CICLE_v10024065mg 10 346 + 337 Gaps:1 27.98 1208 83.43 0.0 hypothetical protein
blastp_kegg lcl|cit:102614736 10 346 + 337 Gaps:1 27.75 1218 83.43 0.0 structural maintenance of chromosomes protein 1-like
blastp_kegg lcl|tcc:TCM_004030 9 346 + 338 Gaps:2 27.98 1208 83.14 0.0 Structural maintenance of chromosome 1 protein putative isoform 1
blastp_kegg lcl|mdm:103428004 9 346 + 338 Gaps:1 27.83 1218 82.30 0.0 structural maintenance of chromosomes protein 1-like
blastp_kegg lcl|pxb:103958884 9 346 + 338 Gaps:1 27.83 1218 82.60 0.0 structural maintenance of chromosomes protein 1
blastp_kegg lcl|mdm:103445629 9 346 + 338 Gaps:1 27.83 1218 82.30 0.0 structural maintenance of chromosomes protein 1
blastp_kegg lcl|pvu:PHAVU_007G1926000 9 346 + 338 Gaps:2 85.79 394 78.40 0.0 hypothetical protein
blastp_pdb 1w1w_D 127 345 + 219 Gaps:21 50.23 430 49.07 3e-56 mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1
blastp_pdb 1w1w_C 127 345 + 219 Gaps:21 50.23 430 49.07 3e-56 mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1
blastp_pdb 1w1w_B 127 345 + 219 Gaps:21 50.23 430 49.07 3e-56 mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1
blastp_pdb 1w1w_A 127 345 + 219 Gaps:21 50.23 430 49.07 3e-56 mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1
blastp_pdb 3kta_D 167 342 + 176 Gaps:23 89.60 173 41.29 1e-28 mol:protein length:173 Chromosome segregation protein smc
blastp_pdb 3kta_B 167 342 + 176 Gaps:23 89.60 173 41.29 1e-28 mol:protein length:173 Chromosome segregation protein smc
blastp_pdb 1xew_Y 169 342 + 174 Gaps:23 88.95 172 41.83 1e-28 mol:protein length:172 SMC protein
blastp_pdb 1xex_B 169 342 + 174 Gaps:23 88.95 172 41.18 3e-28 mol:protein length:172 SMC protein
blastp_pdb 1e69_F 201 275 + 75 Gaps:1 23.60 322 42.11 5e-11 mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_pdb 1e69_E 201 275 + 75 Gaps:1 23.60 322 42.11 5e-11 mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_uniprot_sprot sp|Q6Q1P4|SMC1_ARATH 1 346 + 346 Gaps:7 28.98 1218 73.94 0.0 Structural maintenance of chromosomes protein 1 OS Arabidopsis thaliana GN SMC1 PE 2 SV 2
blastp_uniprot_sprot sp|O94383|SMC1_SCHPO 30 345 + 316 Gaps:32 26.38 1228 43.52 6e-75 Structural maintenance of chromosomes protein 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN psm1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9CU62|SMC1A_MOUSE 11 343 + 333 Gaps:46 27.82 1233 39.94 1e-62 Structural maintenance of chromosomes protein 1A OS Mus musculus GN Smc1a PE 1 SV 4
blastp_uniprot_sprot sp|Q9Z1M9|SMC1A_RAT 11 343 + 333 Gaps:48 27.82 1233 39.65 3e-62 Structural maintenance of chromosomes protein 1A OS Rattus norvegicus GN Smc1a PE 1 SV 1
blastp_uniprot_sprot sp|O97593|SMC1A_BOVIN 11 343 + 333 Gaps:46 27.82 1233 39.36 3e-62 Structural maintenance of chromosomes protein 1A OS Bos taurus GN SMC1A PE 1 SV 1
blastp_uniprot_sprot sp|Q14683|SMC1A_HUMAN 11 343 + 333 Gaps:46 27.82 1233 39.36 3e-62 Structural maintenance of chromosomes protein 1A OS Homo sapiens GN SMC1A PE 1 SV 2
blastp_uniprot_sprot sp|O93308|SMC1A_XENLA 21 343 + 323 Gaps:56 27.03 1232 39.94 4e-61 Structural maintenance of chromosomes protein 1A OS Xenopus laevis GN smc1a PE 1 SV 1
blastp_uniprot_sprot sp|Q8NDV3|SMC1B_HUMAN 15 343 + 329 Gaps:40 27.13 1235 37.01 2e-58 Structural maintenance of chromosomes protein 1B OS Homo sapiens GN SMC1B PE 1 SV 2
blastp_uniprot_sprot sp|P32908|SMC1_YEAST 63 345 + 283 Gaps:31 23.02 1225 41.49 9e-58 Structural maintenance of chromosomes protein 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SMC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q920F6|SMC1B_MOUSE 123 343 + 221 Gaps:17 16.51 1248 50.97 2e-56 Structural maintenance of chromosomes protein 1B OS Mus musculus GN Smc1b PE 1 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 11 346 336 PTHR18937:SF12 none none IPR028468
PANTHER 11 346 336 PTHR18937 none none none
Gene3D 111 345 235 G3DSA:3.40.50.300 none none IPR027417
Coils 7 63 57 Coil none none none
SUPERFAMILY 14 54 41 SSF52540 none none IPR027417
SUPERFAMILY 122 336 215 SSF52540 none none IPR027417
Coils 133 161 29 Coil none none none
Pfam 13 327 315 PF02463 none RecF/RecN/SMC N terminal domain IPR003395

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting