Protein : Qrob_P0369410.2 Q. robur
Protein Identifier  ? Qrob_P0369410.2 Organism . Name  Quercus robur
Score  46.4 Score Type  egn
Protein Description  (M=1) KOG0018//KOG0161//KOG0239//KOG0250//KOG0933//KOG0964//KOG0979//KOG0996 - Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin subunit SMC1) [Cell cycle control cell division chromosome partitioning]. // Myosin class II heavy chain [Cytoskeleton]. // Kinesin (KAR3 subfamily) [Cytoskeleton]. // DNA repair protein RAD18 (SMC family protein) [Replication recombination and repair]. // Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin subunit E) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning]. // Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin subunit SMC3) [Cell cycle control cell division chromosome partitioning]. // Structural maintenance of chromosome protein SMC5/Spr18 SMC superfamily [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning Replication recombination and repair]. // Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin subunit C) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 394  
Kegg Orthology  K06636
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003682 chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
GO:0007064 mitotic sister chromatid cohesion The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle. This cohesion cycle is critical for high fidelity chromosome transmission.
GO:0008278 cohesin complex A protein complex that is required for sister chromatid cohesion in eukaryotes. The cohesin complex forms a molecular ring complex, and is composed of structural maintenance of chromosomes (SMC) and kleisin proteins. For example, in yeast, the complex is composed of the SMC proteins Smc1p and Smc3p, and the kleisin protein Scc1p. In vertebrates, the complex is composed of the SMC1 (SMC1A or SMC1B) and SMC3 heterodimer attached via their hinge domains to a kleisin (RAD21, REC8 or RAD21L) which links them, and one STAG protein (STAG1, STAG2 or STAG3).

48 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101227515 1 393 + 393 Gaps:2 54.56 724 75.95 0.0 structural maintenance of chromosomes protein 1-like
blastp_kegg lcl|cic:CICLE_v10024065mg 1 393 + 393 Gaps:2 32.70 1208 76.20 0.0 hypothetical protein
blastp_kegg lcl|pmum:103334475 1 393 + 393 Gaps:2 32.43 1218 77.97 0.0 structural maintenance of chromosomes protein 1
blastp_kegg lcl|vvi:100263447 1 393 + 393 Gaps:2 30.18 1309 77.47 0.0 structural maintenance of chromosomes protein 1A-like
blastp_kegg lcl|pper:PRUPE_ppa000396mg 1 393 + 393 Gaps:2 32.67 1209 77.97 0.0 hypothetical protein
blastp_kegg lcl|cit:102614736 1 393 + 393 Gaps:2 32.43 1218 76.20 0.0 structural maintenance of chromosomes protein 1-like
blastp_kegg lcl|pxb:103958884 1 393 + 393 Gaps:2 32.43 1218 76.96 0.0 structural maintenance of chromosomes protein 1
blastp_kegg lcl|csv:101204651 1 393 + 393 Gaps:2 31.93 1237 75.95 0.0 SMC1A structural maintenance of chromosomes 1A
blastp_kegg lcl|cmo:103489726 1 393 + 393 Gaps:2 32.40 1219 75.95 0.0 structural maintenance of chromosomes protein 1
blastp_kegg lcl|mdm:103445629 1 393 + 393 Gaps:2 32.43 1218 76.46 0.0 structural maintenance of chromosomes protein 1
blastp_pdb 1w1w_D 8 170 + 163 Gaps:15 40.47 430 50.00 4e-42 mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1
blastp_pdb 1w1w_C 8 170 + 163 Gaps:15 40.47 430 50.00 4e-42 mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1
blastp_pdb 1w1w_B 8 170 + 163 Gaps:15 40.47 430 50.00 4e-42 mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1
blastp_pdb 1w1w_A 8 170 + 163 Gaps:15 40.47 430 50.00 4e-42 mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1
blastp_pdb 3kta_C 10 182 + 173 Gaps:19 97.80 182 35.96 2e-16 mol:protein length:182 Chromosome segregation protein smc
blastp_pdb 3kta_A 10 182 + 173 Gaps:19 97.80 182 35.96 2e-16 mol:protein length:182 Chromosome segregation protein smc
blastp_pdb 1xex_A 10 182 + 173 Gaps:19 97.80 182 35.96 2e-16 mol:protein length:182 SMC protein
blastp_pdb 1xew_X 10 182 + 173 Gaps:19 97.80 182 35.96 2e-16 mol:protein length:182 SMC protein
blastp_pdb 1e69_F 9 160 + 152 Gaps:7 46.27 322 35.57 1e-13 mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_pdb 1e69_E 9 160 + 152 Gaps:7 46.27 322 35.57 1e-13 mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_uniprot_sprot sp|Q6Q1P4|SMC1_ARATH 1 384 + 384 Gaps:1 31.61 1218 66.23 7e-168 Structural maintenance of chromosomes protein 1 OS Arabidopsis thaliana GN SMC1 PE 2 SV 2
blastp_uniprot_sprot sp|O94383|SMC1_SCHPO 8 392 + 385 Gaps:17 32.25 1228 38.64 1e-70 Structural maintenance of chromosomes protein 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN psm1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9CU62|SMC1A_MOUSE 8 388 + 381 Gaps:7 30.98 1233 41.62 2e-67 Structural maintenance of chromosomes protein 1A OS Mus musculus GN Smc1a PE 1 SV 4
blastp_uniprot_sprot sp|O97593|SMC1A_BOVIN 8 388 + 381 Gaps:7 30.98 1233 41.62 2e-67 Structural maintenance of chromosomes protein 1A OS Bos taurus GN SMC1A PE 1 SV 1
blastp_uniprot_sprot sp|Q14683|SMC1A_HUMAN 8 388 + 381 Gaps:7 30.98 1233 41.62 2e-67 Structural maintenance of chromosomes protein 1A OS Homo sapiens GN SMC1A PE 1 SV 2
blastp_uniprot_sprot sp|Q9Z1M9|SMC1A_RAT 8 388 + 381 Gaps:7 30.98 1233 41.36 8e-67 Structural maintenance of chromosomes protein 1A OS Rattus norvegicus GN Smc1a PE 1 SV 1
blastp_uniprot_sprot sp|O93308|SMC1A_XENLA 8 388 + 381 Gaps:7 31.01 1232 42.15 1e-63 Structural maintenance of chromosomes protein 1A OS Xenopus laevis GN smc1a PE 1 SV 1
blastp_uniprot_sprot sp|Q920F6|SMC1B_MOUSE 8 359 + 352 Gaps:12 27.40 1248 39.47 1e-52 Structural maintenance of chromosomes protein 1B OS Mus musculus GN Smc1b PE 1 SV 1
blastp_uniprot_sprot sp|Q8NDV3|SMC1B_HUMAN 8 354 + 347 Gaps:3 27.85 1235 37.79 2e-52 Structural maintenance of chromosomes protein 1B OS Homo sapiens GN SMC1B PE 1 SV 2
blastp_uniprot_sprot sp|P32908|SMC1_YEAST 8 380 + 373 Gaps:30 31.59 1225 34.63 7e-45 Structural maintenance of chromosomes protein 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SMC1 PE 1 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 18 382 365 PTHR18937:SF12 none none IPR028468
Gene3D 9 166 158 G3DSA:3.40.50.300 none none IPR027417
Gene3D 322 353 32 G3DSA:3.40.50.300 none none IPR027417
Coils 170 191 22 Coil none none none
SUPERFAMILY 9 275 267 SSF52540 none none IPR027417
Coils 307 363 57 Coil none none none
PANTHER 18 382 365 PTHR18937 none none none
Coils 205 232 28 Coil none none none
Coils 251 286 36 Coil none none none
Pfam 10 138 129 PF02463 none RecF/RecN/SMC N terminal domain IPR003395

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting