Protein : Qrob_P0338980.2 Q. robur
Protein Identifier  ? Qrob_P0338980.2 Organism . Name  Quercus robur
Score  76.1 Score Type  egn
Protein Description  (M=1) PTHR23428//PTHR23428:SF14 - HISTONE H2B // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 192  
Kegg Orthology  K11252
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pda:103699979 1 188 + 188 Gaps:20 98.99 198 48.47 1e-45 histone H2B.1 embryonic-like
blastp_kegg lcl|cam:101499426 61 186 + 126 Gaps:16 64.22 218 58.57 2e-45 histone H2B.2-like
blastp_kegg lcl|pmum:103327455 99 188 + 90 none 29.90 301 77.78 3e-45 histone H2B.2
blastp_kegg lcl|pper:PRUPE_ppa024155mg 99 188 + 90 none 29.51 305 77.78 5e-45 hypothetical protein
blastp_kegg lcl|pxb:103947732 65 185 + 121 Gaps:1 48.22 253 65.57 1e-44 probable histone H2B.3
blastp_kegg lcl|cmo:103500693 1 191 + 191 Gaps:55 98.76 241 44.96 3e-44 histone H2B type 1-A-like
blastp_kegg lcl|cic:CICLE_v10029880mg 62 191 + 130 Gaps:20 57.69 260 53.33 2e-43 hypothetical protein
blastp_kegg lcl|vvi:100253395 96 184 + 89 none 41.20 216 76.40 3e-43 histone H2B.2-like
blastp_kegg lcl|cit:102623377 54 187 + 134 Gaps:20 46.95 328 53.90 7e-43 histone H2B.2-like
blastp_kegg lcl|gmx:100786873 95 185 + 91 none 40.44 225 76.92 4e-42 histone H2B.2-like
blastp_pdb 3c9k_F 84 186 + 103 Gaps:1 83.20 125 61.54 3e-37 mol:protein length:125 Histone H2B 7
blastp_pdb 3c9k_B 84 186 + 103 Gaps:1 83.20 125 61.54 3e-37 mol:protein length:125 Histone H2B 7
blastp_pdb 1p3p_H 90 185 + 96 none 76.80 125 62.50 1e-36 mol:protein length:125 Histone H2B
blastp_pdb 1p3p_D 90 185 + 96 none 76.80 125 62.50 1e-36 mol:protein length:125 Histone H2B
blastp_pdb 1p3o_H 90 185 + 96 none 76.80 125 62.50 1e-36 mol:protein length:125 Histone H2B
blastp_pdb 1p3o_D 90 185 + 96 none 76.80 125 62.50 1e-36 mol:protein length:125 Histone H2B
blastp_pdb 1p3m_H 90 185 + 96 none 76.80 125 62.50 1e-36 mol:protein length:125 Histone H2B
blastp_pdb 1p3m_D 90 185 + 96 none 76.80 125 62.50 1e-36 mol:protein length:125 Histone H2B
blastp_pdb 1p3l_H 90 185 + 96 none 76.80 125 62.50 1e-36 mol:protein length:125 Histone H2B
blastp_pdb 1p3l_D 90 185 + 96 none 76.80 125 62.50 1e-36 mol:protein length:125 Histone H2B
blastp_uniprot_sprot sp|Q96A08|H2B1A_HUMAN 85 186 + 102 Gaps:1 79.53 127 64.36 3e-37 Histone H2B type 1-A OS Homo sapiens GN HIST1H2BA PE 1 SV 3
blastp_uniprot_sprot sp|P10853|H2B1F_MOUSE 90 186 + 97 Gaps:1 77.78 126 65.31 6e-37 Histone H2B type 1-F/J/L OS Mus musculus GN Hist1h2bf PE 1 SV 2
blastp_uniprot_sprot sp|Q64475|H2B1B_MOUSE 90 186 + 97 Gaps:1 77.78 126 65.31 7e-37 Histone H2B type 1-B OS Mus musculus GN Hist1h2bb PE 1 SV 3
blastp_uniprot_sprot sp|Q99880|H2B1L_HUMAN 90 186 + 97 Gaps:1 77.78 126 65.31 7e-37 Histone H2B type 1-L OS Homo sapiens GN HIST1H2BL PE 1 SV 3
blastp_uniprot_sprot sp|Q8CGP2|H2B1P_MOUSE 90 186 + 97 Gaps:1 77.78 126 65.31 7e-37 Histone H2B type 1-P OS Mus musculus GN Hist1h2bp PE 1 SV 3
blastp_uniprot_sprot sp|P35068|H2B1_TIGCA 86 186 + 101 Gaps:3 79.67 123 65.31 8e-37 Histone H2B.1/H2B.2 OS Tigriopus californicus PE 3 SV 2
blastp_uniprot_sprot sp|P35069|H2B3_TIGCA 86 186 + 101 Gaps:3 79.67 123 65.31 8e-37 Histone H2B.3 OS Tigriopus californicus PE 3 SV 2
blastp_uniprot_sprot sp|P70696|H2B1A_MOUSE 84 186 + 103 Gaps:1 81.89 127 61.54 8e-37 Histone H2B type 1-A OS Mus musculus GN Hist1h2ba PE 1 SV 3
blastp_uniprot_sprot sp|Q8CGP1|H2B1K_MOUSE 90 185 + 96 Gaps:1 76.98 126 65.98 9e-37 Histone H2B type 1-K OS Mus musculus GN Hist1h2bk PE 1 SV 3
blastp_uniprot_sprot sp|Q43216|H2B5_WHEAT 95 186 + 92 none 67.65 136 65.22 1e-36 Histone H2B.5 OS Triticum aestivum PE 1 SV 3

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 68 185 118 G3DSA:1.10.20.10 none none IPR009072
PANTHER 76 185 110 PTHR23428:SF14 none none none
PANTHER 76 185 110 PTHR23428 none none IPR000558
SUPERFAMILY 73 185 113 SSF47113 none none IPR009072
PRINTS 170 183 14 PR00621 none Histone H2B signature IPR000558
PRINTS 140 157 18 PR00621 none Histone H2B signature IPR000558
PRINTS 157 170 14 PR00621 none Histone H2B signature IPR000558
PRINTS 99 117 19 PR00621 none Histone H2B signature IPR000558
PRINTS 118 138 21 PR00621 none Histone H2B signature IPR000558
SMART 89 185 97 SM00427 none Histone H2B IPR000558
Pfam 95 162 68 PF00125 none Core histone H2A/H2B/H3/H4 IPR007125

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting