Protein : Qrob_P0338890.2 Q. robur
Protein Identifier  ? Qrob_P0338890.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=8) K11252 - histone H2B Gene Prediction Quality  validated
Protein length 

Sequence

Length: 142  
Kegg Orthology  K11252
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103326263 1 141 + 141 Gaps:3 100.00 144 95.14 1e-88 probable histone H2B.1
blastp_kegg lcl|pper:PRUPE_ppa013013mg 1 141 + 141 Gaps:3 100.00 144 95.14 1e-88 hypothetical protein
blastp_kegg lcl|mtr:MTR_4g063240 1 141 + 141 Gaps:6 100.00 147 89.12 3e-82 Histone H2B
blastp_kegg lcl|mtr:MTR_4g071180 1 141 + 141 Gaps:7 100.00 148 90.54 1e-77 Histone H2B
blastp_kegg lcl|mtr:MTR_4g063200 1 141 + 141 Gaps:7 100.00 148 89.19 2e-77 Histone H2B
blastp_kegg lcl|mtr:MTR_4g063220 1 141 + 141 Gaps:7 100.00 148 89.19 2e-77 Histone H2B
blastp_kegg lcl|pop:POPTR_0005s14680g 1 141 + 141 Gaps:7 100.00 148 88.51 2e-77 histone H2B family protein
blastp_kegg lcl|eus:EUTSA_v10002705mg 1 141 + 141 Gaps:5 100.00 146 88.36 5e-77 hypothetical protein
blastp_kegg lcl|sly:778282 1 141 + 141 Gaps:1 100.00 142 89.44 4e-76 H2B-1 LeH2B-1 histone H2B
blastp_kegg lcl|rcu:RCOM_0350180 1 141 + 141 Gaps:8 100.00 141 90.07 5e-76 histone h2b putative
blastp_pdb 3azn_H 9 141 + 133 Gaps:11 94.57 129 74.59 5e-55 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azn_D 9 141 + 133 Gaps:11 94.57 129 74.59 5e-55 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azm_H 9 141 + 133 Gaps:11 94.57 129 74.59 5e-55 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azm_D 9 141 + 133 Gaps:11 94.57 129 74.59 5e-55 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azl_H 9 141 + 133 Gaps:11 94.57 129 74.59 5e-55 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azl_D 9 141 + 133 Gaps:11 94.57 129 74.59 5e-55 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azk_H 9 141 + 133 Gaps:11 94.57 129 74.59 5e-55 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azk_D 9 141 + 133 Gaps:11 94.57 129 74.59 5e-55 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azj_H 9 141 + 133 Gaps:11 94.57 129 74.59 5e-55 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azj_D 9 141 + 133 Gaps:11 94.57 129 74.59 5e-55 mol:protein length:129 Histone H2B type 1-J
blastp_uniprot_sprot sp|Q1S9I9|H2B1_MEDTR 1 141 + 141 Gaps:7 100.00 148 90.54 4e-79 Probable histone H2B.1 OS Medicago truncatula PE 1 SV 3
blastp_uniprot_sprot sp|P93354|H2B_TOBAC 1 141 + 141 Gaps:5 100.00 146 83.56 1e-78 Histone H2B OS Nicotiana tabacum GN HIS2B PE 2 SV 3
blastp_uniprot_sprot sp|Q1SWQ1|H2B2_MEDTR 1 141 + 141 Gaps:7 100.00 148 89.19 2e-77 Probable histone H2B.2 OS Medicago truncatula PE 3 SV 3
blastp_uniprot_sprot sp|O65821|H2B1_SOLLC 1 141 + 141 Gaps:1 100.00 142 89.44 2e-77 Histone H2B.1 OS Solanum lycopersicum GN H2B-1 PE 2 SV 4
blastp_uniprot_sprot sp|O49118|H2B_CAPAN 1 141 + 141 Gaps:4 100.00 145 88.28 2e-77 Histone H2B OS Capsicum annuum GN HIS2B PE 2 SV 3
blastp_uniprot_sprot sp|O23629|H2B6_ARATH 1 141 + 141 Gaps:9 100.00 150 85.33 1e-76 Histone H2B.6 OS Arabidopsis thaliana GN H2B PE 1 SV 3
blastp_uniprot_sprot sp|Q9SI96|H2B3_ARATH 1 141 + 141 Gaps:10 100.00 151 86.75 1e-76 Histone H2B.3 OS Arabidopsis thaliana GN At2g28720 PE 1 SV 3
blastp_uniprot_sprot sp|Q9LQQ4|H2B1_ARATH 1 141 + 141 Gaps:7 100.00 148 87.16 3e-75 Histone H2B.1 OS Arabidopsis thaliana GN At1g07790 PE 1 SV 3
blastp_uniprot_sprot sp|O65819|H2B3_SOLLC 8 141 + 134 Gaps:3 100.00 137 91.24 3e-74 Histone H2B.3 (Fragment) OS Solanum lycopersicum GN H2B-3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZUS0|H2B4_ARATH 1 140 + 140 Gaps:6 100.00 138 89.13 4e-72 Histone H2B.4 OS Arabidopsis thaliana GN At2g37470 PE 1 SV 3

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 26 141 116 SSF47113 none none IPR009072
PANTHER 2 141 140 PTHR23428 none none IPR000558
SMART 44 140 97 SM00427 none Histone H2B IPR000558
Gene3D 22 141 120 G3DSA:1.10.20.10 none none IPR009072
Pfam 50 117 68 PF00125 none Core histone H2A/H2B/H3/H4 IPR007125
ProSitePatterns 109 131 23 PS00357 none Histone H2B signature. IPR000558
PRINTS 73 93 21 PR00621 none Histone H2B signature IPR000558
PRINTS 95 112 18 PR00621 none Histone H2B signature IPR000558
PRINTS 125 138 14 PR00621 none Histone H2B signature IPR000558
PRINTS 54 72 19 PR00621 none Histone H2B signature IPR000558
PRINTS 112 125 14 PR00621 none Histone H2B signature IPR000558

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting