Protein : Qrob_P0321750.2 Q. robur
Protein Identifier  ? Qrob_P0321750.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL (PTHR30603:SF4) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 110  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO:0016987 sigma factor activity A sigma factor is the promoter specificity subunit of eubacterial-type multisubunit RNA polymerases, those whose core subunit composition is often described as alpha(2)-beta-beta-prime. (This type of multisubunit RNA polymerase complex is known to be found in eubacteria and plant plastids). Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, this binds specifically to promoter sequences, with the sigma factor making sequence specific contacts with the promoter elements. The sigma subunit is released from the elongating form of the polymerase and is thus free to act catalytically for multiple RNA polymerase core enzymes.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015349 3 90 + 88 none 17.05 516 78.41 1e-38 Sigma factor E isoform 1
blastp_kegg lcl|pxb:103958163 3 90 + 88 none 16.96 519 76.14 3e-37 RNA polymerase sigma factor sigE chloroplastic/mitochondrial-like
blastp_kegg lcl|mdm:103439850 3 90 + 88 none 16.96 519 76.14 3e-37 RNA polymerase sigma factor sigE chloroplastic/mitochondrial-like
blastp_kegg lcl|pxb:103948057 3 90 + 88 none 16.96 519 76.14 4e-37 RNA polymerase sigma factor sigE chloroplastic/mitochondrial-like
blastp_kegg lcl|cmo:103503014 3 90 + 88 none 17.22 511 76.14 2e-36 RNA polymerase sigma factor sigE chloroplastic/mitochondrial
blastp_kegg lcl|gmx:100811515 2 90 + 89 none 17.38 512 69.66 1e-35 GmSIG5A SIG5A RNA polymerase sigma factor rpoD-like
blastp_kegg lcl|pmum:103333667 3 90 + 88 none 17.36 507 72.73 1e-35 RNA polymerase sigma factor sigE chloroplastic/mitochondrial
blastp_kegg lcl|gmx:100812580 3 90 + 88 none 17.36 507 73.86 2e-35 GmSIG5B SIG5B RNA polymerase sigma factor sigE chloroplastic/mitochondrial-like
blastp_kegg lcl|sot:102586954 3 90 + 88 none 17.05 516 72.73 4e-35 RNA polymerase sigma factor sigE chloroplastic/mitochondrial-like
blastp_kegg lcl|sly:101252660 3 90 + 88 none 17.05 516 71.59 5e-35 RNA polymerase sigma factor sigE chloroplastic/mitochondrial-like
blastp_uniprot_sprot sp|Q9ZNX9|SIGE_ARATH 3 90 + 88 none 17.02 517 64.77 2e-32 RNA polymerase sigma factor sigE chloroplastic/mitochondrial OS Arabidopsis thaliana GN SIGE PE 1 SV 1
rpsblast_cdd gnl|CDD|146934 6 76 + 71 Gaps:1 92.31 78 36.11 2e-09 pfam04539 Sigma70_r3 Sigma-70 region 3. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA but as some specific bacterial promoters containing an extended -10 promoter element residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 4 59 56 SSF88659 none none IPR013324
Gene3D 4 46 43 G3DSA:1.10.10.10 none none IPR011991
PANTHER 3 90 88 PTHR30603:SF4 none none none
PANTHER 3 90 88 PTHR30603 none none none
Pfam 5 74 70 PF04539 none Sigma-70 region 3 IPR007624

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4

0 Targeting