Protein : Qrob_P0313900.2 Q. robur
Protein Identifier  ? Qrob_P0313900.2 Organism . Name  Quercus robur
Score  79.1 Score Type  egn
Protein Description  (M=1) K10872 - meiotic recombination protein DMC1 Code Enzyme  EC:3.6.1.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 347  
Kegg Orthology  K10872
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0008094 DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
GO:0006259 DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO:0007131 reciprocal meiotic recombination The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0910960 1 346 + 346 Gaps:7 100.00 353 92.92 0.0 meiotic recombination protein dmc1 putative
blastp_kegg lcl|pop:POPTR_0010s09170g 2 346 + 345 Gaps:7 100.00 352 89.77 0.0 POPTRDRAFT_769259 Meiotic recombination protein DMC1
blastp_kegg lcl|cic:CICLE_v10006682mg 1 346 + 346 Gaps:6 100.00 352 92.05 0.0 hypothetical protein
blastp_kegg lcl|cam:101497611 1 346 + 346 Gaps:3 100.00 345 89.57 0.0 meiotic recombination protein DMC1 homolog
blastp_kegg lcl|pmum:103324186 1 346 + 346 Gaps:3 100.00 349 91.69 0.0 meiotic recombination protein DMC1 homolog
blastp_kegg lcl|cit:102627316 1 346 + 346 Gaps:2 100.00 344 93.02 0.0 meiotic recombination protein DMC1 homolog
blastp_kegg lcl|csv:101221817 1 346 + 346 Gaps:3 100.00 345 90.72 0.0 meiotic recombination protein DMC1 homolog
blastp_kegg lcl|tcc:TCM_020712 1 333 + 333 none 93.02 358 94.29 0.0 DNA repair family protein
blastp_kegg lcl|cmo:103483670 1 346 + 346 Gaps:3 100.00 345 90.43 0.0 meiotic recombination protein DMC1 homolog
blastp_kegg lcl|pvu:PHAVU_007G062500g 1 346 + 346 Gaps:3 88.69 389 91.01 0.0 hypothetical protein
blastp_pdb 2zjb_B 22 346 + 325 Gaps:5 95.04 343 61.96 7e-138 mol:protein length:343 Meiotic recombination protein DMC1/LIM15 homo
blastp_pdb 2zjb_A 22 346 + 325 Gaps:5 95.04 343 61.96 7e-138 mol:protein length:343 Meiotic recombination protein DMC1/LIM15 homo
blastp_pdb 1v5w_B 22 346 + 325 Gaps:5 95.04 343 61.96 7e-138 mol:protein length:343 Meiotic recombination protein DMC1/LIM15 homo
blastp_pdb 1v5w_A 22 346 + 325 Gaps:5 95.04 343 61.96 7e-138 mol:protein length:343 Meiotic recombination protein DMC1/LIM15 homo
blastp_pdb 1szp_F 31 346 + 316 Gaps:3 98.13 321 52.38 4e-105 mol:protein length:321 DNA repair protein RAD51
blastp_pdb 1szp_E 31 346 + 316 Gaps:3 98.13 321 52.38 4e-105 mol:protein length:321 DNA repair protein RAD51
blastp_pdb 1szp_D 31 346 + 316 Gaps:3 98.13 321 52.38 4e-105 mol:protein length:321 DNA repair protein RAD51
blastp_pdb 1szp_C 31 346 + 316 Gaps:3 98.13 321 52.38 4e-105 mol:protein length:321 DNA repair protein RAD51
blastp_pdb 1szp_B 31 346 + 316 Gaps:3 98.13 321 52.38 4e-105 mol:protein length:321 DNA repair protein RAD51
blastp_pdb 1szp_A 31 346 + 316 Gaps:3 98.13 321 52.38 4e-105 mol:protein length:321 DNA repair protein RAD51
blastp_uniprot_sprot sp|Q96449|DMC1_SOYBN 1 346 + 346 Gaps:3 100.00 345 90.72 0.0 Meiotic recombination protein DMC1 homolog OS Glycine max PE 2 SV 1
blastp_uniprot_sprot sp|P37384|DMC1_LILLO 8 346 + 339 Gaps:3 96.85 349 88.17 0.0 Meiotic recombination protein DMC1 homolog OS Lilium longiflorum GN LIM15 PE 2 SV 1
blastp_uniprot_sprot sp|Q39009|DMC1_ARATH 1 346 + 346 Gaps:2 100.00 344 88.66 0.0 Meiotic recombination protein DMC1 homolog OS Arabidopsis thaliana GN LIM15 PE 1 SV 2
blastp_uniprot_sprot sp|Q61880|DMC1_MOUSE 22 346 + 325 Gaps:5 95.88 340 61.66 1e-137 Meiotic recombination protein DMC1/LIM15 homolog OS Mus musculus GN Dmc1 PE 1 SV 1
blastp_uniprot_sprot sp|Q14565|DMC1_HUMAN 22 346 + 325 Gaps:5 95.88 340 61.96 2e-137 Meiotic recombination protein DMC1/LIM15 homolog OS Homo sapiens GN DMC1 PE 1 SV 2
blastp_uniprot_sprot sp|P50265|DLH1_CANAX 25 343 + 319 Gaps:4 98.46 324 57.68 6e-126 Meiotic recombination protein DLH1 OS Candida albicans GN DLH1 PE 3 SV 1
blastp_uniprot_sprot sp|O42634|DMC1_SCHPO 22 343 + 322 Gaps:4 96.99 332 57.76 1e-125 Meiotic recombination protein dmc1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN dmc1 PE 1 SV 2
blastp_uniprot_sprot sp|P25453|DMC1_YEAST 30 346 + 317 Gaps:4 94.91 334 55.21 3e-119 Meiotic recombination protein DMC1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN DMC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q06609|RAD51_HUMAN 12 346 + 335 Gaps:5 99.12 339 52.38 1e-116 DNA repair protein RAD51 homolog 1 OS Homo sapiens GN RAD51 PE 1 SV 1
blastp_uniprot_sprot sp|Q8MKI8|RAD51_CANFA 12 346 + 335 Gaps:5 99.12 339 52.08 6e-116 DNA repair protein RAD51 homolog 1 OS Canis familiaris GN RAD51 PE 2 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 90 345 256 PF08423 none Rad51 IPR013632
SUPERFAMILY 107 343 237 SSF52540 none none IPR027417
SUPERFAMILY 23 90 68 SSF47794 none none IPR010995
Gene3D 29 97 69 G3DSA:1.10.150.20 none none none
Gene3D 105 344 240 G3DSA:3.40.50.300 none none IPR027417
Pfam 36 86 51 PF14520 none Helix-hairpin-helix domain none
TIGRFAM 31 344 314 TIGR02238 none recomb_DMC1: meiotic recombinase Dmc1 IPR011940
ProSiteProfiles 104 275 172 PS50162 none RecA family profile 1. IPR020588
PIRSF 17 346 330 PIRSF005856 none none IPR016467
PANTHER 2 346 345 PTHR22942 none none none
ProSiteProfiles 281 346 66 PS50163 none RecA family profile 2. IPR020587
PANTHER 2 346 345 PTHR22942:SF29 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting