7 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0005524 | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
GO:0016020 | membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
GO:0046872 | metal ion binding | Interacting selectively and non-covalently with any metal ion. |
GO:0016021 | integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
GO:0000166 | nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. |
GO:0005388 | calcium-transporting ATPase activity | Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). |
GO:0070588 | calcium ion transmembrane transport | A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
49 Blast
36 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
Phobius | 1 | 158 | 158 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
Phobius | 323 | 341 | 19 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
TIGRFAM | 59 | 762 | 704 | TIGR01517 | none | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | IPR006408 |
Gene3D | 85 | 130 | 46 | G3DSA:2.70.150.10 | none | none | IPR008250 |
Gene3D | 187 | 246 | 60 | G3DSA:2.70.150.10 | none | none | IPR008250 |
SUPERFAMILY | 78 | 196 | 119 | SSF81665 | none | none | none |
SUPERFAMILY | 282 | 400 | 119 | SSF81665 | none | none | none |
Pfam | 465 | 539 | 75 | PF13246 | none | Putative hydrolase of sodium-potassium ATPase alpha subunit | none |
Phobius | 182 | 301 | 120 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
Gene3D | 608 | 758 | 151 | G3DSA:3.40.50.1000 | none | none | IPR023214 |
PANTHER | 66 | 753 | 688 | PTHR24093 | none | none | none |
SUPERFAMILY | 201 | 279 | 79 | SSF81653 | none | none | none |
TIGRFAM | 165 | 320 | 156 | TIGR01494 | none | ATPase_P-type: HAD ATPase, P-type, family IC | IPR001757 |
TIGRFAM | 680 | 760 | 81 | TIGR01494 | none | ATPase_P-type: HAD ATPase, P-type, family IC | IPR001757 |
Gene3D | 247 | 577 | 331 | G3DSA:1.20.1110.10 | none | none | IPR023298 |
PRINTS | 163 | 183 | 21 | PR00121 | none | Sodium/potassium-transporting ATPase signature | none |
PRINTS | 523 | 541 | 19 | PR00121 | none | Sodium/potassium-transporting ATPase signature | none |
PRINTS | 399 | 420 | 22 | PR00121 | none | Sodium/potassium-transporting ATPase signature | none |
PRINTS | 136 | 150 | 15 | PR00121 | none | Sodium/potassium-transporting ATPase signature | none |
Phobius | 302 | 322 | 21 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
SUPERFAMILY | 415 | 606 | 192 | SSF81660 | none | none | IPR023299 |
PRINTS | 244 | 258 | 15 | PR00119 | none | P-type cation-transporting ATPase superfamily signature | IPR001757 |
PRINTS | 624 | 634 | 11 | PR00119 | none | P-type cation-transporting ATPase superfamily signature | IPR001757 |
PRINTS | 732 | 744 | 13 | PR00119 | none | P-type cation-transporting ATPase superfamily signature | IPR001757 |
PRINTS | 602 | 613 | 12 | PR00119 | none | P-type cation-transporting ATPase superfamily signature | IPR001757 |
PRINTS | 708 | 727 | 20 | PR00119 | none | P-type cation-transporting ATPase superfamily signature | IPR001757 |
PRINTS | 406 | 420 | 15 | PR00119 | none | P-type cation-transporting ATPase superfamily signature | IPR001757 |
SUPERFAMILY | 404 | 424 | 21 | SSF56784 | none | none | IPR023214 |
SUPERFAMILY | 554 | 756 | 203 | SSF56784 | none | none | IPR023214 |
Phobius | 342 | 363 | 22 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
4 Localization
Analysis | Start | End | Length |
---|---|---|---|
TMHMM | 423 | 440 | 17 |
TMHMM | 159 | 181 | 22 |
TMHMM | 342 | 364 | 22 |
TMHMM | 300 | 322 | 22 |
9 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran2_2014_nLBD*_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,25 | 0 | 35,55 | lod | 2,5951 | 6 |
Bourran2_2014_nP*_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,19 | 0 | 31,97 | lod | 2,8472 | 6 |
Bourran2_2002_QTL11_peak_Bud_burst_A4 | Qrob_Chr06 | 6 | s_1C41PA_791 | s_1AM1AV_1141 | 19,17 | 0 | 34,57 | lod | 2,3 | 2,9 |
Bourran2_2014_nEpis*_3P | Qrob_Chr08 | 8 | s_1DA4QW_688 | s_1DNI7D_820 | 17,96 | 0 | 37,75 | lod | 2,9745 | 7,5 |
Bourran2_2014_nPriBD_A4 | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,51 | 3,36 | 51,86 | lod | 1,6747 | 3,9 |
Bourran2_2014_nPriLBD*_3P | Qrob_Chr11 | 11 | v_12066_307 | s_1B15GJ_447 | 3,37 | 0,57 | 16,17 | lod | 3,4299 | 6,9 |
Champenoux_2015_nEpis_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,53 | 25,47 | 27,72 | lod | 4.4 | 8.9 |
Champenoux_2015_nP_3P | Qrob_Chr06 | 6 | s_1A386O_228 | s_1AYZFS_603 | 27,03 | 26,47 | 27,34 | lod | 2.8 | 7.2 |
Bourran2_2014_nPriBD*_3P | Qrob_Chr06 | 6 | s_1B6WLL_980 | v_10064_133 | 11,49 | 0 | 31,52 | lod | 4,1208 | 9,1 |