Protein : Qrob_P0290660.2 Q. robur
Protein Identifier  ? Qrob_P0290660.2 Organism . Name  Quercus robur
Score  6.3 Score Type  egn
Protein Description  (M=1) KOG0263//KOG0266//KOG0271//KOG0272//KOG0274//KOG0296//KOG0310//KOG0319//KOG2495//KOG4378 - Transcription initiation factor TFIID subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]. // WD40 repeat-containing protein [General function prediction only]. // Notchless-like WD40 repeat-containing protein [Function unknown]. // U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]. // Cdc4 and related F-box and WD-40 proteins [General function prediction only]. // Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]. // Conserved WD40 repeat-containing protein [Function unknown]. // WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]. // NADH-dehydrogenase (ubiquinone) [Energy production and conversion]. // Nuclear protein COP1 [Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 581  
Kegg Orthology  K14549
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0005730 nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101229785 104 579 + 476 Gaps:54 100.00 528 66.86 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|csv:101220388 104 579 + 476 Gaps:54 100.00 528 66.86 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|pper:PRUPE_ppa003776mg 127 579 + 453 Gaps:72 95.45 550 68.19 0.0 hypothetical protein
blastp_kegg lcl|pmum:103322321 127 579 + 453 Gaps:72 95.45 550 67.62 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|cic:CICLE_v10019671mg 123 579 + 457 Gaps:47 94.74 532 68.65 0.0 hypothetical protein
blastp_kegg lcl|cit:102621396 123 579 + 457 Gaps:47 94.74 532 68.65 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|pop:POPTR_0014s13130g 98 579 + 482 Gaps:51 99.06 534 69.38 0.0 POPTRDRAFT_774857 transducin family protein
blastp_kegg lcl|cmo:103492718 104 579 + 476 Gaps:54 100.00 528 66.67 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|vvi:100264761 104 579 + 476 Gaps:51 99.81 528 66.03 0.0 U3 small nucleolar RNA-associated protein 15 homolog-like
blastp_kegg lcl|tcc:TCM_004505 114 579 + 466 Gaps:56 96.47 539 70.00 0.0 Transducin family protein / WD-40 repeat family protein
blastp_pdb 3ow8_D 151 306 + 156 Gaps:34 38.01 321 29.51 8e-06 mol:protein length:321 WD repeat-containing protein 61
blastp_pdb 3ow8_C 151 306 + 156 Gaps:34 38.01 321 29.51 8e-06 mol:protein length:321 WD repeat-containing protein 61
blastp_pdb 3ow8_B 151 306 + 156 Gaps:34 38.01 321 29.51 8e-06 mol:protein length:321 WD repeat-containing protein 61
blastp_pdb 3ow8_A 151 306 + 156 Gaps:34 38.01 321 29.51 8e-06 mol:protein length:321 WD repeat-containing protein 61
blastp_pdb 2co0_A 152 306 + 155 Gaps:14 53.02 315 24.55 1e-05 mol:protein length:315 WD-REPEAT PROTEIN 5
blastp_uniprot_sprot sp|Q5F3D7|UTP15_CHICK 104 574 + 471 Gaps:50 94.42 520 31.36 3e-71 U3 small nucleolar RNA-associated protein 15 homolog OS Gallus gallus GN UTP15 PE 2 SV 1
blastp_uniprot_sprot sp|Q5XGE2|UTP15_XENTR 113 574 + 462 Gaps:63 93.79 515 32.51 4e-71 U3 small nucleolar RNA-associated protein 15 homolog OS Xenopus tropicalis GN utp15 PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZXZ2|UTP15_XENLA 109 574 + 466 Gaps:59 95.34 515 31.98 4e-69 U3 small nucleolar RNA-associated protein 15 homolog OS Xenopus laevis GN utp15 PE 2 SV 1
blastp_uniprot_sprot sp|A2RRU3|UTP15_RAT 128 580 + 453 Gaps:47 90.53 528 32.22 9e-69 U3 small nucleolar RNA-associated protein 15 homolog OS Rattus norvegicus GN Utp15 PE 2 SV 1
blastp_uniprot_sprot sp|A7MB12|UTP15_BOVIN 128 579 + 452 Gaps:47 91.91 519 32.08 1e-68 U3 small nucleolar RNA-associated protein 15 homolog OS Bos taurus GN UTP15 PE 2 SV 1
blastp_uniprot_sprot sp|Q8TED0|UTP15_HUMAN 128 579 + 452 Gaps:47 92.08 518 32.08 2e-68 U3 small nucleolar RNA-associated protein 15 homolog OS Homo sapiens GN UTP15 PE 1 SV 3
blastp_uniprot_sprot sp|Q8C7V3|UTP15_MOUSE 128 580 + 453 Gaps:47 90.53 528 32.01 1e-67 U3 small nucleolar RNA-associated protein 15 homolog OS Mus musculus GN Utp15 PE 2 SV 1
blastp_uniprot_sprot sp|Q5REE0|UTP15_PONAB 128 579 + 452 Gaps:47 92.08 518 31.87 6e-66 U3 small nucleolar RNA-associated protein 15 homolog OS Pongo abelii GN UTP15 PE 2 SV 1
blastp_uniprot_sprot sp|O94365|UTP15_SCHPO 104 573 + 470 Gaps:70 99.60 494 30.89 3e-63 U3 small nucleolar RNA-associated protein 15 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN utp15 PE 3 SV 1
blastp_uniprot_sprot sp|Q7ZW33|UTP15_DANRE 109 574 + 466 Gaps:64 94.78 517 31.84 2e-60 U3 small nucleolar RNA-associated protein 15 homolog OS Danio rerio GN utp15 PE 2 SV 1
rpsblast_cdd gnl|CDD|192278 427 573 + 147 none 100.00 147 40.14 8e-42 pfam09384 UTP15_C UTP15 C terminal. U3 snoRNA is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA. It is a component of the ribosomal small subunit (SSU) processome. UTP15 is needed for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). This entry represents the C terminal of UTP15 and is found adjacent to WD40 repeats (pfam00400).
rpsblast_cdd gnl|CDD|29257 135 416 + 282 Gaps:154 100.00 289 53.63 6e-23 cd00200 WD40 WD40 domain found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction pre-mRNA processing and cytoskeleton assembly typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long hence the name WD40 between GH and WD lies a conserved core serves as a stable propeller-like platform to which proteins can bind either stably or reversibly forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet instances with few detectable copies are hypothesized to form larger structures by dimerization each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands 7 copies of the repeat are present in this alignment..
rpsblast_cdd gnl|CDD|32473 68 397 + 330 Gaps:43 56.87 466 37.74 5e-12 COG2319 COG2319 FOG: WD40 repeat [General function prediction only].
rpsblast_kog gnl|CDD|35531 119 579 + 461 Gaps:51 99.79 487 39.71 1e-123 KOG0310 KOG0310 KOG0310 Conserved WD40 repeat-containing protein [Function unknown].
rpsblast_kog gnl|CDD|37706 40 116 + 77 Gaps:20 18.53 491 34.07 9e-11 KOG2495 KOG2495 KOG2495 NADH-dehydrogenase (ubiquinone) [Energy production and conversion].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 144 280 137 G3DSA:2.130.10.10 none none IPR015943
Pfam 427 572 146 PF09384 none UTP15 C terminal IPR018983
Pfam 264 292 29 PF00400 none WD domain, G-beta repeat IPR001680
ProSiteProfiles 142 268 127 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
SMART 315 363 49 SM00320 none WD40 repeats IPR001680
SMART 253 292 40 SM00320 none WD40 repeats IPR001680
SMART 177 216 40 SM00320 none WD40 repeats IPR001680
SMART 135 174 40 SM00320 none WD40 repeats IPR001680
PANTHER 127 579 453 PTHR19924 none none none
SUPERFAMILY 138 407 270 SSF50978 none none IPR017986
Gene3D 281 400 120 G3DSA:2.130.10.10 none none IPR015943

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting