Blast Analysis : gnl|CDD|29257

Analysis  rpsblast_cdd Start  135
End  416 Strand  +
Length  282 Note  Gaps:154
Hit Coverage  100.00 Hit Length  289
Hit Pident  53.63 E Val  6e-23
Hit Description  cd00200 WD40 WD40 domain found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction pre-mRNA processing and cytoskeleton assembly typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long hence the name WD40 between GH and WD lies a conserved core serves as a stable propeller-like platform to which proteins can bind either stably or reversibly forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet instances with few detectable copies are hypothesized to form larger structures by dimerization each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands 7 copies of the repeat are present in this alignment.. Hit Pcons  20.07
Name  Qrob_P0290660.2
Paste the following link
Lists
This BlastAnalysis isn't in any lists. Upload a list.

1 Protein

Protein Identifier
Organism . Name 		Score Score Type Protein Description Alias (in v1) Code Enzyme Gene Prediction Quality
Qrob_P0290660.2 Quercus robur 6.3 egn (M=1) KOG0263//KOG0266//KOG0271//KOG0272//KOG0274//KOG0296//KOG0310//KOG0319//KOG2495//KOG4378 - Transcription initiation factor TFIID subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]. // WD40 repeat-containing protein [General function prediction only]. // Notchless-like WD40 repeat-containing protein [Function unknown]. // U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]. // Cdc4 and related F-box and WD-40 proteins [General function prediction only]. // Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]. // Conserved WD40 repeat-containing protein [Function unknown]. // WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]. // NADH-dehydrogenase (ubiquinone) [Energy production and conversion]. // Nuclear protein COP1 [Signal transduction mechanisms].     validated