Protein : Qrob_P0279510.2 Q. robur
Protein Identifier  ? Qrob_P0279510.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02692 - photosystem I subunit II Gene Prediction Quality  validated
Protein length 

Sequence

Length: 198  
Kegg Orthology  K02692
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0009522 photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
GO:0009538 photosystem I reaction center A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin.
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100240928 1 197 + 197 Gaps:7 100.00 204 81.86 3e-115 photosystem I reaction center subunit II chloroplastic-like
blastp_kegg lcl|cit:102577962 3 197 + 195 Gaps:16 100.00 209 80.38 8e-111 PSADA PSI reaction center subunit II
blastp_kegg lcl|gmx:100800992 1 197 + 197 Gaps:16 100.00 203 82.27 8e-110 photosystem I reaction center subunit II chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_007G055900g 1 197 + 197 Gaps:12 100.00 207 80.19 1e-109 hypothetical protein
blastp_kegg lcl|pxb:103956623 1 197 + 197 Gaps:20 100.00 213 77.46 2e-109 photosystem I reaction center subunit II chloroplastic-like
blastp_kegg lcl|csv:101207214 1 197 + 197 Gaps:10 100.00 207 77.29 2e-108 PSI-D psaD photosystem I reaction center subunit II chloroplastic-like
blastp_kegg lcl|cam:101508930 1 197 + 197 Gaps:18 100.00 215 76.28 5e-108 photosystem I reaction center subunit II chloroplastic-like
blastp_kegg lcl|mdm:103439960 1 197 + 197 Gaps:15 100.00 212 76.42 6e-108 photosystem I reaction center subunit II chloroplastic-like
blastp_kegg lcl|sly:543978 1 197 + 197 Gaps:11 90.83 229 77.88 6e-108 psaD PSI-D photosystem I subunit II protein precursor
blastp_kegg lcl|mdm:103403899 1 197 + 197 Gaps:20 100.00 213 77.00 7e-108 photosystem I reaction center subunit II chloroplastic-like
blastp_pdb 2wsf_D 1 197 + 197 Gaps:15 100.00 212 71.23 4e-95 mol:protein length:212 PHOTOSYSTEM I REACTION CENTER SUBUNIT II CHL
blastp_pdb 2wse_D 1 197 + 197 Gaps:15 100.00 212 71.23 4e-95 mol:protein length:212 PHOTOSYSTEM I REACTION CENTER SUBUNIT II CHL
blastp_pdb 2wsc_D 1 197 + 197 Gaps:15 100.00 212 71.23 4e-95 mol:protein length:212 PHOTOSYSTEM I REACTION CENTER SUBUNIT II CHL
blastp_pdb 2o01_D 60 197 + 138 none 100.00 138 91.30 2e-90 mol:protein length:138 Photosystem I reaction center subunit II chl
blastp_pdb 3lw5_D 60 197 + 138 none 100.00 138 90.58 4e-89 mol:protein length:138 Putative uncharacterized protein
blastp_pdb 3pcq_D 68 196 + 129 Gaps:1 94.20 138 62.31 2e-51 mol:protein length:138 Photosystem I reaction center subunit II
blastp_pdb 1jb0_D 68 196 + 129 Gaps:1 94.20 138 62.31 2e-51 mol:protein length:138 PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT II
blastp_uniprot_sprot sp|P32869|PSAD_CUCSA 1 197 + 197 Gaps:10 100.00 207 77.29 7e-110 Photosystem I reaction center subunit II chloroplastic OS Cucumis sativus GN psaD PE 1 SV 1
blastp_uniprot_sprot sp|P12372|PSAD_SOLLC 1 197 + 197 Gaps:11 100.00 208 77.88 3e-109 Photosystem I reaction center subunit II chloroplastic OS Solanum lycopersicum GN psaD PE 2 SV 1
blastp_uniprot_sprot sp|P29302|PSAD_NICSY 1 197 + 197 Gaps:7 100.00 204 79.41 1e-105 Photosystem I reaction center subunit II chloroplastic OS Nicotiana sylvestris GN psaD PE 2 SV 1
blastp_uniprot_sprot sp|Q9SA56|PSAD2_ARATH 3 197 + 195 Gaps:15 100.00 204 75.49 4e-104 Photosystem I reaction center subunit II-2 chloroplastic OS Arabidopsis thaliana GN PSAD2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9S7H1|PSAD1_ARATH 3 197 + 195 Gaps:19 100.00 208 73.56 2e-100 Photosystem I reaction center subunit II-1 chloroplastic OS Arabidopsis thaliana GN psaD1 PE 1 SV 1
blastp_uniprot_sprot sp|P12353|PSAD_SPIOL 1 197 + 197 Gaps:15 100.00 212 73.11 1e-99 Photosystem I reaction center subunit II chloroplastic OS Spinacia oleracea GN psaD PE 1 SV 2
blastp_uniprot_sprot sp|P36213|PSAD_HORVU 1 197 + 197 Gaps:8 100.00 205 72.68 1e-92 Photosystem I reaction center subunit II chloroplastic OS Hordeum vulgare GN psaD PE 1 SV 1
blastp_uniprot_sprot sp|Q39615|PSAD_CHLRE 56 194 + 139 none 70.92 196 73.38 4e-72 Photosystem I reaction center subunit II chloroplastic OS Chlamydomonas reinhardtii GN psaD PE 1 SV 1
blastp_uniprot_sprot sp|Q9T4W8|PSAD_CYAPA 49 196 + 148 Gaps:1 67.73 220 64.43 6e-66 Photosystem I reaction center subunit II cyanelle OS Cyanophora paradoxa GN psaD PE 2 SV 1
blastp_uniprot_sprot sp|O78502|PSAD_GUITH 61 196 + 136 Gaps:1 97.16 141 67.88 2e-61 Photosystem I reaction center subunit II OS Guillardia theta GN psaD PE 3 SV 1
rpsblast_cdd gnl|CDD|177675 8 197 + 190 Gaps:6 100.00 196 75.00 9e-86 PLN00041 PLN00041 photosystem I reaction center subunit II Provisional.
rpsblast_cdd gnl|CDD|145591 59 196 + 138 Gaps:1 100.00 139 74.82 2e-71 pfam02531 PsaD PsaD. This family consists of PsaD from plants and cyanobacteria. PsaD is an extrinsic polypeptide of photosystem I (PSI) and is required for native assembly of PSI reaction clusters and is implicated in the electrostatic binding of ferredoxin within the reaction centre. PsaD forms a dimer in solution which is bound by PsaE however PsaD is monomeric in its native complexed PSI environment.
rpsblast_cdd gnl|CDD|177067 61 196 + 136 Gaps:1 98.56 139 73.72 2e-61 CHL00145 psaD photosystem I subunit II Validated.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 12 16 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 4 11 8 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 42 197 156 PTHR31982:SF3 none none none
Gene3D 62 196 135 G3DSA:3.30.1470.10 none none IPR003685
Pfam 60 196 137 PF02531 none PsaD IPR003685
SUPERFAMILY 62 196 135 SSF64234 none none IPR003685
Phobius 1 16 16 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 42 197 156 PTHR31982 none none none
Phobius 17 197 181 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 18 17

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 38   Mitochondrion 4 0.043 0.668 NON-PLANT 38