Protein : Qrob_P0270130.2 Q. robur
Protein Identifier  ? Qrob_P0270130.2 Organism . Name  Quercus robur
Score  46.7 Score Type  egn
Protein Description  (M=1) K02635 - cytochrome b6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 268  
Kegg Orthology  K02635
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0 Synonyms

13 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0005506 iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
GO:0020037 heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
GO:0022900 electron transport chain A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0022904 respiratory electron transport chain A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity Enables the directed movement of electrons within the cytochrome b6/f complex of photosystem II.
GO:0042301 phosphate ion binding Interacting selectively and non-covalently with phosphate.
GO:0050821 protein stabilization Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|brp:103848419 1 262 + 262 Gaps:18 62.08 451 86.79 2e-168 cytochrome b
blastp_kegg lcl|sly:101259972 1 262 + 262 Gaps:19 28.36 991 89.68 2e-165 photosystem II CP47 chlorophyll apoprotein-like
blastp_kegg lcl|mtr:MTR_4g051370 1 262 + 262 Gaps:18 28.93 968 88.93 3e-164 Photosystem II CP47 chlorophyll apoprotein
blastp_kegg lcl|rcu:RCOM_ORF00074 44 267 + 224 none 98.25 228 98.21 4e-156 petB cytochrome b6
blastp_kegg lcl|cmo:103504414 42 267 + 226 none 86.92 260 96.90 7e-156 cytochrome b6
blastp_kegg lcl|cit:4271129 42 267 + 226 none 96.58 234 96.02 1e-154 petB CisiCp052 cytochrome b6
blastp_kegg lcl|pda:8890541 51 267 + 217 none 99.54 218 99.08 2e-154 petB PhdaC_p052 cytochrome b6
blastp_kegg lcl|zma:845192 51 267 + 217 none 92.74 234 99.08 1e-153 petB ZemaCp052 cytochrome b6
blastp_kegg lcl|sbi:SobiCp053 51 267 + 217 none 92.74 234 99.08 1e-153 petB cytochrome b6
blastp_kegg lcl|sbi:SORBI_03g017580 51 267 + 217 none 93.53 232 99.08 2e-153 SORBIDRAFT_03g017580 Sb03g017580 hypothetical protein
blastp_pdb 1q90_B 53 267 + 215 none 100.00 215 87.44 7e-139 mol:protein length:215 Cytochrome b6
blastp_pdb 2e76_A 53 267 + 215 none 100.00 215 82.79 1e-133 mol:protein length:215 Cytochrome b6
blastp_pdb 2e75_A 53 267 + 215 none 100.00 215 82.79 1e-133 mol:protein length:215 Cytochrome b6
blastp_pdb 2e74_A 53 267 + 215 none 100.00 215 82.79 1e-133 mol:protein length:215 Cytochrome b6
blastp_pdb 2d2c_N 53 267 + 215 none 100.00 215 82.79 1e-133 mol:protein length:215 Cytochrome b6
blastp_pdb 2d2c_A 53 267 + 215 none 100.00 215 82.79 1e-133 mol:protein length:215 Cytochrome b6
blastp_pdb 1vf5_N 53 267 + 215 none 100.00 215 82.79 1e-133 mol:protein length:215 CYTOCHROME B6
blastp_pdb 1vf5_A 53 267 + 215 none 100.00 215 82.79 1e-133 mol:protein length:215 CYTOCHROME B6
blastp_pdb 2zt9_A 53 267 + 215 none 100.00 215 82.79 1e-132 mol:protein length:215 Cytochrome b6
blastp_pdb 1zrt_P 59 266 + 208 Gaps:1 47.37 437 34.30 2e-36 mol:protein length:437 Cytochrome b
blastp_uniprot_sprot sp|Q4VZI6|CYB6_CUCSA 53 267 + 215 none 100.00 215 99.07 2e-154 Cytochrome b6 OS Cucumis sativus GN petB PE 3 SV 1
blastp_uniprot_sprot sp|A0A365|CYB6_COFAR 53 267 + 215 none 100.00 215 99.07 2e-154 Cytochrome b6 OS Coffea arabica GN petB PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9I9|CYB6_LIRTU 53 267 + 215 none 100.00 215 98.60 3e-154 Cytochrome b6 OS Liriodendron tulipifera GN petB PE 3 SV 1
blastp_uniprot_sprot sp|Q68RX7|CYB6_PANGI 53 267 + 215 none 100.00 215 98.60 6e-154 Cytochrome b6 OS Panax ginseng GN petB PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9T2|CYB6_DAUCA 53 267 + 215 none 100.00 215 98.60 6e-154 Cytochrome b6 OS Daucus carota GN petB PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZIY9|CYB6_VITVI 53 267 + 215 none 100.00 215 98.60 1e-153 Cytochrome b6 OS Vitis vinifera GN petB PE 3 SV 1
blastp_uniprot_sprot sp|Q06GW7|CYB6_DRIGR 53 267 + 215 none 100.00 215 98.14 3e-153 Cytochrome b6 OS Drimys granadensis GN petB PE 3 SV 1
blastp_uniprot_sprot sp|Q332U7|CYB6_LACSA 53 267 + 215 none 100.00 215 98.14 3e-153 Cytochrome b6 OS Lactuca sativa GN petB PE 3 SV 1
blastp_uniprot_sprot sp|Q06RA2|CYB6_JASNU 53 267 + 215 none 100.00 215 98.14 3e-153 Cytochrome b6 OS Jasminum nudiflorum GN petB PE 3 SV 1
blastp_uniprot_sprot sp|Q70XX8|CYB6_AMBTC 53 267 + 215 none 100.00 215 97.67 7e-153 Cytochrome b6 OS Amborella trichopoda GN petB PE 3 SV 1

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 159 169 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 140 158 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 46 267 222 PTHR19271 none none none
SUPERFAMILY 14 48 35 SSF161025 none none none
Phobius 111 139 29 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 14 43 30 G3DSA:1.20.5.880 none none none
Phobius 236 255 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 143 266 124 PF13631 none Cytochrome b(N-terminal)/b6/petB IPR005797
Phobius 84 110 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 57 267 211 SSF81342 none none IPR016174
PIRSF 53 267 215 PIRSF000032 none none IPR023530
Phobius 191 235 45 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 170 190 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProDom 15 43 29 PD003584 none PHOTOSYSTEM II PHOSPHOPROTEIN CHLOROPLAST PHOTOSYNTHESIS H MEMBRANE CENTER REACTION PSII-H IPR001056
Gene3D 58 266 209 G3DSA:1.20.810.10 none none IPR027387
Pfam 16 44 29 PF00737 none Photosystem II 10 kDa phosphoprotein IPR001056
Phobius 256 267 12 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 83 83 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Hamap 53 267 215 MF_00633 none Cytochrome b6 [petB]. IPR023530
ProSiteProfiles 56 267 212 PS51002 none Cytochrome b/b6 N-terminal region profile. IPR005797

5 Localization

Analysis Start End Length
TMHMM 114 133 19
TMHMM 82 104 22
TMHMM 169 191 22
TMHMM 235 257 22
TMHMM 140 159 19

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting