Protein : Qrob_P0270120.2 Q. robur
Protein Identifier  ? Qrob_P0270120.2 Organism . Name  Quercus robur
Score  29.3 Score Type  egn
Protein Description  (M=1) K02704 - photosystem II CP47 chlorophyll apoprotein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 509  
Kegg Orthology  K02704
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0 Synonyms

9 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
GO:0009772 photosynthetic electron transport in photosystem II A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I.
GO:0019684 photosynthesis, light reaction The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis.
GO:0016168 chlorophyll binding Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
GO:0009521 photosystem A complex located in a photosynthetic membrane that consists of a photoreaction center associated with accessory pigments and electron carriers. Examples of this component are found in Arabidopsis thaliana and in photosynthetic bacterial and archaeal species.
GO:0009767 photosynthetic electron transport chain A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101259972 1 506 + 506 none 51.06 991 97.83 0.0 photosystem II CP47 chlorophyll apoprotein-like
blastp_kegg lcl|vvi:4025125 1 508 + 508 none 100.00 508 98.82 0.0 psbB ViviCp048 photosystem II P680 chlorophyll A apoprotein
blastp_kegg lcl|pmum:18668058 1 508 + 508 none 100.00 508 98.03 0.0 psbB CP95_p040 photosystem II CP47 chlorophyll apoprotein
blastp_kegg lcl|pper:PrpeC_p048 1 508 + 508 none 100.00 508 98.03 0.0 psbB photosystem II CP47 chlorophyll apoprotein
blastp_kegg lcl|tcc:ThcaC_p047 1 508 + 508 none 100.00 508 98.03 0.0 psbB photosystem II CP47 chlorophyll apoprotein
blastp_kegg lcl|mtr:MTR_4g051370 1 508 + 508 none 52.48 968 96.46 0.0 Photosystem II CP47 chlorophyll apoprotein
blastp_kegg lcl|sot:4099870 1 506 + 506 none 99.61 508 97.83 0.0 psbB SotuCp048 photosystem II P680 chlorophyll A apoprotein
blastp_kegg lcl|sly:3950388 1 506 + 506 none 99.61 508 97.83 0.0 psbB LyesC2p044 photosystem II CP47 chlorophyll apoprotein
blastp_kegg lcl|pop:Poptr_cp049 1 508 + 508 none 100.00 508 97.24 0.0 psbB photosystem II 47 kDa protein
blastp_kegg lcl|rcu:RCOM_ORF00070 1 508 + 508 none 100.00 508 97.44 0.0 psbB photosystem II 47 kDa protein
blastp_pdb 2axt_B 1 506 + 506 Gaps:1 99.41 510 77.51 0.0 mol:protein length:510 CP47 protein
blastp_pdb 1s5l_B 1 506 + 506 Gaps:1 99.41 510 77.51 0.0 mol:protein length:510 photosystem II core light harvesting protein
blastp_pdb 3arc_B 2 504 + 503 Gaps:1 100.00 504 77.58 0.0 mol:protein length:504 Photosystem II core light harvesting protein
blastp_pdb 3a0h_B 2 489 + 488 none 100.00 488 77.87 0.0 mol:protein length:488 Photosystem II core light harvesting protein
blastp_pdb 3a0b_B 2 489 + 488 none 100.00 488 77.87 0.0 mol:protein length:488 Photosystem II core light harvesting protein
blastp_pdb 3prr_B 1 506 + 506 Gaps:1 99.41 510 77.51 0.0 mol:protein length:510 Photosystem II core light harvesting protein
blastp_pdb 3prq_B 1 506 + 506 Gaps:1 99.41 510 77.51 0.0 mol:protein length:510 Photosystem II core light harvesting protein
blastp_pdb 3kzi_B 1 506 + 506 Gaps:1 99.41 510 77.51 0.0 mol:protein length:510 Photosystem II core light harvesting protein
blastp_pdb 3bz2_B 1 506 + 506 Gaps:1 99.41 510 77.51 0.0 mol:protein length:510 Photosystem II core light harvesting protein
blastp_pdb 3bz1_B 1 506 + 506 Gaps:1 99.41 510 77.51 0.0 mol:protein length:510 Photosystem II core light harvesting protein
blastp_uniprot_sprot sp|Q0ZIZ3|PSBB_VITVI 1 508 + 508 none 100.00 508 98.82 0.0 Photosystem II CP47 chlorophyll apoprotein OS Vitis vinifera GN psbB PE 3 SV 1
blastp_uniprot_sprot sp|Q09WZ1|PSBB_MORIN 1 508 + 508 none 100.00 508 98.23 0.0 Photosystem II CP47 chlorophyll apoprotein OS Morus indica GN psbB PE 3 SV 1
blastp_uniprot_sprot sp|B1A961|PSBB_CARPA 1 508 + 508 none 100.00 508 98.03 0.0 Photosystem II CP47 chlorophyll apoprotein OS Carica papaya GN psbB PE 3 SV 1
blastp_uniprot_sprot sp|Q2L932|PSBB_GOSHI 1 508 + 508 none 100.00 508 98.03 0.0 Photosystem II CP47 chlorophyll apoprotein OS Gossypium hirsutum GN psbB PE 3 SV 1
blastp_uniprot_sprot sp|Q68RY1|PSBB_PANGI 1 508 + 508 none 100.00 508 97.83 0.0 Photosystem II CP47 chlorophyll apoprotein OS Panax ginseng GN psbB PE 3 SV 1
blastp_uniprot_sprot sp|Q332V1|PSBB_LACSA 1 507 + 507 none 99.80 508 97.63 0.0 Photosystem II CP47 chlorophyll apoprotein OS Lactuca sativa GN psbB PE 3 SV 1
blastp_uniprot_sprot sp|B1NWH6|PSBB_MANES 1 508 + 508 none 100.00 508 97.83 0.0 Photosystem II CP47 chlorophyll apoprotein OS Manihot esculenta GN psbB PE 3 SV 1
blastp_uniprot_sprot sp|Q49KX2|PSBB_EUCGG 1 508 + 508 none 100.00 508 97.83 0.0 Photosystem II CP47 chlorophyll apoprotein OS Eucalyptus globulus subsp. globulus GN psbB PE 3 SV 1
blastp_uniprot_sprot sp|P06411|PSBB_TOBAC 1 506 + 506 none 99.61 508 97.83 0.0 Photosystem II CP47 chlorophyll apoprotein OS Nicotiana tabacum GN psbB PE 3 SV 1
blastp_uniprot_sprot sp|Q2VEF4|PSBB_SOLTU 1 506 + 506 none 99.61 508 97.83 0.0 Photosystem II CP47 chlorophyll apoprotein OS Solanum tuberosum GN psbB PE 3 SV 1

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Hamap 1 508 508 MF_01495 none Photosystem II CP47 reaction center protein [psbB]. IPR017486
Phobius 61 78 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 163 197 35 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 139 162 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 218 236 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 2 488 487 SSF161077 none none IPR000932
Phobius 41 60 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 198 217 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 119 138 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 259 448 190 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 1 500 500 PF00421 none Photosystem II protein IPR000932
Phobius 469 508 40 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 98 118 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 20 40 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 19 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
TIGRFAM 1 504 504 TIGR03039 none PS_II_CP47: photosystem II chlorophyll-binding protein CP47 IPR017486
Phobius 449 468 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 237 258 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 79 97 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

5 Localization

Analysis Start End Length
TMHMM 237 259 22
TMHMM 198 217 19
TMHMM 20 42 22
TMHMM 139 161 22
TMHMM 96 118 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 38   Secretory pathway 5 0.485 0.184 NON-PLANT 38