Protein : Qrob_P0269280.2 Q. robur
Protein Identifier  ? Qrob_P0269280.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=20) 4.2.3.22 - Germacradienol synthase. Code Enzyme  EC:4.2.3.22, EC:4.2.3.75
Gene Prediction Quality  validated Protein length 

Sequence

Length: 558  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0000287 magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
GO:0010333 terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
GO:0016829 lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102627944 1 557 + 557 Gaps:5 100.00 554 68.23 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|pop:POPTR_0015s09710g 1 557 + 557 Gaps:6 100.00 553 68.17 0.0 POPTRDRAFT_575250 hypothetical protein
blastp_kegg lcl|pop:POPTR_0015s05270g 1 557 + 557 Gaps:7 99.28 554 67.27 0.0 hypothetical protein
blastp_kegg lcl|vvi:100260210 1 555 + 555 Gaps:3 99.82 555 65.70 0.0 GERA valencene synthase-like
blastp_kegg lcl|vvi:100232954 1 557 + 557 Gaps:6 100.00 557 64.63 0.0 (-)-germacrene D synthase (EC:4.2.3.22 4.2.3.75)
blastp_kegg lcl|vvi:100257265 1 557 + 557 Gaps:6 100.00 557 64.09 0.0 (E)-beta-caryophyllene synthase
blastp_kegg lcl|vvi:100246608 1 556 + 556 Gaps:3 95.20 583 64.32 0.0 valencene synthase-like
blastp_kegg lcl|cit:102614035 16 557 + 542 Gaps:14 99.09 547 65.87 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|pmum:103343924 1 557 + 557 Gaps:4 100.00 561 62.92 0.0 (-)-alpha-pinene synthase-like
blastp_kegg lcl|vvi:100264159 1 557 + 557 Gaps:4 100.00 559 62.25 0.0 (-)-germacrene D synthase-like
blastp_pdb 3g4f_B 4 557 + 554 Gaps:6 98.92 554 55.47 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4f_A 4 557 + 554 Gaps:6 98.92 554 55.47 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_B 4 557 + 554 Gaps:6 98.92 554 55.47 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_A 4 557 + 554 Gaps:6 98.92 554 55.47 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 5eau_A 5 557 + 553 Gaps:9 100.00 548 48.91 0.0 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 3m00_A 5 557 + 553 Gaps:9 99.64 550 48.72 0.0 mol:protein length:550 Aristolochene synthase
blastp_pdb 3lz9_A 5 557 + 553 Gaps:9 99.64 550 48.72 0.0 mol:protein length:550 Aristolochene synthase
blastp_pdb 5eas_A 5 557 + 553 Gaps:9 100.00 548 48.91 0.0 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 3m02_A 5 557 + 553 Gaps:9 99.64 550 48.54 0.0 mol:protein length:550 Aristolochene synthase
blastp_pdb 3m01_A 5 557 + 553 Gaps:9 99.64 550 48.54 0.0 mol:protein length:550 Aristolochene synthase
blastp_uniprot_sprot sp|Q6Q3H3|TPSGD_VITVI 1 557 + 557 Gaps:6 100.00 557 64.63 0.0 (-)-germacrene D synthase OS Vitis vinifera GN VIT_19s0014g04930 PE 1 SV 1
blastp_uniprot_sprot sp|F6M8H7|SMST_SANMU 17 557 + 541 Gaps:2 96.62 562 62.98 0.0 Probable sesquiterpene synthase OS Santalum murrayanum GN STPS PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H4|SAST_SANAL 16 557 + 542 Gaps:2 97.32 559 63.60 0.0 Probable sesquiterpene synthase OS Santalum album GN SesquiTPS1 PE 3 SV 1
blastp_uniprot_sprot sp|B5A435|STPS1_SANAL 19 557 + 539 Gaps:2 96.78 559 63.59 0.0 Sesquiterpene synthase OS Santalum album PE 1 SV 1
blastp_uniprot_sprot sp|F6M8H5|SAUST_SANAS 17 557 + 541 Gaps:2 96.62 562 62.98 0.0 Probable sesquiterpene synthase OS Santalum austrocaledonicum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|Q6Q3H2|TPSVS_VITVI 1 555 + 555 Gaps:2 99.82 556 61.98 0.0 Valencene synthase OS Vitis vinifera GN ValCS PE 1 SV 1
blastp_uniprot_sprot sp|E3W207|SAUSS_SANAS 16 557 + 542 Gaps:2 97.32 559 62.32 0.0 Sesquiterpene synthase OS Santalum austrocaledonicum PE 2 SV 1
blastp_uniprot_sprot sp|B9SCB6|TPS2_RICCO 12 554 + 543 Gaps:3 98.18 550 59.63 0.0 Probable terpene synthase 2 OS Ricinus communis GN TPS2 PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H6|SPIST_SANSP 17 557 + 541 Gaps:2 96.62 562 61.51 0.0 Probable sesquiterpene synthase OS Santalum spicatum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|E3W208|SPISS_SANSP 7 557 + 551 Gaps:3 98.58 562 60.83 0.0 Sesquiterpene synthase OS Santalum spicatum PE 2 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 29 204 176 PF01397 none Terpene synthase, N-terminal domain IPR001906
Coils 41 62 22 Coil none none none
Gene3D 245 555 311 G3DSA:1.10.600.10 none none IPR008949
Pfam 235 502 268 PF03936 none Terpene synthase family, metal binding domain IPR005630
PANTHER 19 557 539 PTHR31225:SF1 none none none
SUPERFAMILY 230 555 326 SSF48576 none none IPR008949
PANTHER 19 557 539 PTHR31225 none none none
Gene3D 49 244 196 G3DSA:1.50.30.10 none none IPR001906
SUPERFAMILY 25 230 206 SSF48239 none none IPR008930

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting