Protein : Qrob_P0257550.2 Q. robur
Protein Identifier  ? Qrob_P0257550.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=20) 4.2.3.22 - Germacradienol synthase. Code Enzyme  EC:4.2.3.22, EC:4.2.3.75
Gene Prediction Quality  validated Protein length 

Sequence

Length: 560  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0000287 magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
GO:0010333 terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
GO:0016829 lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_031134 1 559 + 559 Gaps:7 100.00 566 66.43 0.0 Delta-cadinene synthase isozyme A putative
blastp_kegg lcl|vvi:100257265 1 559 + 559 Gaps:6 100.00 557 67.86 0.0 (E)-beta-caryophyllene synthase
blastp_kegg lcl|vvi:100232954 1 559 + 559 Gaps:6 100.00 557 67.50 0.0 (-)-germacrene D synthase (EC:4.2.3.22 4.2.3.75)
blastp_kegg lcl|fve:101302497 17 559 + 543 Gaps:13 97.86 560 69.53 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|cit:102606948 9 559 + 551 Gaps:10 98.93 563 65.71 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|cit:102612857 1 551 + 551 Gaps:15 90.00 620 65.05 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|pop:POPTR_0001s44080g 66 559 + 494 Gaps:5 99.80 500 67.54 0.0 hypothetical protein
blastp_kegg lcl|vvi:100260629 11 559 + 549 Gaps:4 98.04 560 63.93 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|cit:102623643 1 559 + 559 Gaps:10 100.00 559 62.25 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|cit:102623066 9 559 + 551 Gaps:10 98.93 559 62.39 0.0 (-)-germacrene D synthase-like
blastp_pdb 3g4f_B 1 559 + 559 Gaps:11 100.00 554 53.43 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4f_A 1 559 + 559 Gaps:11 100.00 554 53.43 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_B 1 559 + 559 Gaps:11 100.00 554 53.43 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_A 1 559 + 559 Gaps:11 100.00 554 53.43 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 5eas_A 9 559 + 551 Gaps:11 99.64 548 47.44 6e-177 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 5eat_A 9 559 + 551 Gaps:11 99.64 548 47.44 9e-177 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 3m00_A 6 559 + 554 Gaps:11 99.82 550 46.81 2e-175 mol:protein length:550 Aristolochene synthase
blastp_pdb 3lz9_A 6 559 + 554 Gaps:11 99.82 550 46.81 2e-175 mol:protein length:550 Aristolochene synthase
blastp_pdb 3m02_A 6 559 + 554 Gaps:11 99.82 550 46.81 2e-175 mol:protein length:550 Aristolochene synthase
blastp_pdb 3m01_A 6 559 + 554 Gaps:11 99.82 550 46.81 2e-175 mol:protein length:550 Aristolochene synthase
blastp_uniprot_sprot sp|Q6Q3H3|TPSGD_VITVI 1 559 + 559 Gaps:6 100.00 557 67.50 0.0 (-)-germacrene D synthase OS Vitis vinifera GN VIT_19s0014g04930 PE 1 SV 1
blastp_uniprot_sprot sp|B9SCB6|TPS2_RICCO 1 556 + 556 Gaps:9 99.82 550 61.02 0.0 Probable terpene synthase 2 OS Ricinus communis GN TPS2 PE 3 SV 1
blastp_uniprot_sprot sp|Q6Q3H2|TPSVS_VITVI 1 557 + 557 Gaps:8 99.82 556 59.28 0.0 Valencene synthase OS Vitis vinifera GN ValCS PE 1 SV 1
blastp_uniprot_sprot sp|F6M8H7|SMST_SANMU 11 557 + 547 Gaps:2 97.69 562 56.65 0.0 Probable sesquiterpene synthase OS Santalum murrayanum GN STPS PE 3 SV 1
blastp_uniprot_sprot sp|B5A435|STPS1_SANAL 15 557 + 543 Gaps:2 97.50 559 56.88 0.0 Sesquiterpene synthase OS Santalum album PE 1 SV 1
blastp_uniprot_sprot sp|F6M8H5|SAUST_SANAS 15 557 + 543 Gaps:2 96.98 562 57.61 0.0 Probable sesquiterpene synthase OS Santalum austrocaledonicum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H4|SAST_SANAL 21 557 + 537 Gaps:2 96.42 559 56.77 0.0 Probable sesquiterpene synthase OS Santalum album GN SesquiTPS1 PE 3 SV 1
blastp_uniprot_sprot sp|E3W208|SPISS_SANSP 4 557 + 554 Gaps:2 98.93 562 55.40 0.0 Sesquiterpene synthase OS Santalum spicatum PE 2 SV 1
blastp_uniprot_sprot sp|E3W207|SAUSS_SANAS 15 557 + 543 Gaps:2 97.50 559 55.78 0.0 Sesquiterpene synthase OS Santalum austrocaledonicum PE 2 SV 1
blastp_uniprot_sprot sp|F6M8H6|SPIST_SANSP 15 557 + 543 Gaps:2 96.98 562 56.15 0.0 Probable sesquiterpene synthase OS Santalum spicatum GN SesquiTPS PE 3 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 559 559 PTHR31225 none none none
Gene3D 248 558 311 G3DSA:1.10.600.10 none none IPR008949
Pfam 237 504 268 PF03936 none Terpene synthase family, metal binding domain IPR005630
PANTHER 1 559 559 PTHR31225:SF1 none none none
SUPERFAMILY 233 557 325 SSF48576 none none IPR008949
Pfam 31 207 177 PF01397 none Terpene synthase, N-terminal domain IPR001906
Gene3D 49 247 199 G3DSA:1.50.30.10 none none IPR001906
SUPERFAMILY 27 233 207 SSF48239 none none IPR008930

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting