Protein : Qrob_P0257520.2 Q. robur
Protein Identifier  ? Qrob_P0257520.2 Organism . Name  Quercus robur
Score  93.0 Score Type  egn
Protein Description  (M=20) 4.2.3.22 - Germacradienol synthase. Code Enzyme  EC:4.2.3.22, EC:4.2.3.75
Gene Prediction Quality  validated Protein length 

Sequence

Length: 605  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0000287 magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
GO:0010333 terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
GO:0016829 lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100232954 1 603 + 603 Gaps:51 99.82 557 71.94 0.0 (-)-germacrene D synthase (EC:4.2.3.22 4.2.3.75)
blastp_kegg lcl|tcc:TCM_031134 1 603 + 603 Gaps:52 99.82 566 68.85 0.0 Delta-cadinene synthase isozyme A putative
blastp_kegg lcl|vvi:100257265 1 603 + 603 Gaps:51 99.82 557 69.60 0.0 (E)-beta-caryophyllene synthase
blastp_kegg lcl|fve:101302497 20 602 + 583 Gaps:57 96.07 560 71.19 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|cit:102606948 1 603 + 603 Gaps:53 99.82 563 66.37 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|cit:102612857 1 596 + 596 Gaps:60 90.00 620 65.77 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|vvi:100260629 1 603 + 603 Gaps:50 99.82 560 64.22 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|pop:POPTR_0001s44080g 66 603 + 538 Gaps:50 99.60 500 68.07 0.0 hypothetical protein
blastp_kegg lcl|cit:102614827 1 603 + 603 Gaps:111 99.90 983 66.90 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|pxb:103927426 13 604 + 592 Gaps:57 98.20 557 64.90 0.0 (-)-germacrene D synthase-like
blastp_pdb 3g4f_B 1 602 + 602 Gaps:56 99.64 554 53.26 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4f_A 1 602 + 602 Gaps:56 99.64 554 53.26 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_B 1 602 + 602 Gaps:56 99.64 554 53.26 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_A 1 602 + 602 Gaps:56 99.64 554 53.26 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 5eas_A 18 602 + 585 Gaps:56 97.63 548 47.85 3e-163 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 5eat_A 18 602 + 585 Gaps:56 97.63 548 47.85 4e-163 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 3m00_A 18 602 + 585 Gaps:56 97.27 550 48.04 9e-163 mol:protein length:550 Aristolochene synthase
blastp_pdb 3lz9_A 18 602 + 585 Gaps:56 97.27 550 48.04 9e-163 mol:protein length:550 Aristolochene synthase
blastp_pdb 5eau_A 18 602 + 585 Gaps:56 97.63 548 47.85 1e-162 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 3m02_A 18 602 + 585 Gaps:56 97.27 550 47.85 2e-162 mol:protein length:550 Aristolochene synthase
blastp_uniprot_sprot sp|Q6Q3H3|TPSGD_VITVI 1 603 + 603 Gaps:51 99.82 557 71.94 0.0 (-)-germacrene D synthase OS Vitis vinifera GN VIT_19s0014g04930 PE 1 SV 1
blastp_uniprot_sprot sp|B9SCB6|TPS2_RICCO 17 601 + 585 Gaps:50 97.64 550 62.20 0.0 Probable terpene synthase 2 OS Ricinus communis GN TPS2 PE 3 SV 1
blastp_uniprot_sprot sp|B5A435|STPS1_SANAL 8 602 + 595 Gaps:47 98.75 559 57.79 0.0 Sesquiterpene synthase OS Santalum album PE 1 SV 1
blastp_uniprot_sprot sp|Q6Q3H2|TPSVS_VITVI 6 602 + 597 Gaps:50 99.46 556 58.77 0.0 Valencene synthase OS Vitis vinifera GN ValCS PE 1 SV 1
blastp_uniprot_sprot sp|F6M8H7|SMST_SANMU 9 602 + 594 Gaps:47 98.04 562 57.71 0.0 Probable sesquiterpene synthase OS Santalum murrayanum GN STPS PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H4|SAST_SANAL 16 602 + 587 Gaps:47 97.32 559 57.90 0.0 Probable sesquiterpene synthase OS Santalum album GN SesquiTPS1 PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H5|SAUST_SANAS 15 602 + 588 Gaps:47 96.98 562 58.72 0.0 Probable sesquiterpene synthase OS Santalum austrocaledonicum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|E3W207|SAUSS_SANAS 8 602 + 595 Gaps:47 98.75 559 56.70 0.0 Sesquiterpene synthase OS Santalum austrocaledonicum PE 2 SV 1
blastp_uniprot_sprot sp|F6M8H6|SPIST_SANSP 15 602 + 588 Gaps:47 96.98 562 57.06 0.0 Probable sesquiterpene synthase OS Santalum spicatum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|E3W208|SPISS_SANSP 4 602 + 599 Gaps:47 98.93 562 56.12 0.0 Sesquiterpene synthase OS Santalum spicatum PE 2 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 27 233 207 SSF48239 none none IPR008930
Gene3D 248 378 131 G3DSA:1.10.600.10 none none IPR008949
Gene3D 424 603 180 G3DSA:1.10.600.10 none none IPR008949
PANTHER 1 379 379 PTHR31225 none none none
Pfam 237 385 149 PF03936 none Terpene synthase family, metal binding domain IPR005630
Pfam 390 549 160 PF03936 none Terpene synthase family, metal binding domain IPR005630
PANTHER 425 604 180 PTHR31225 none none none
Coils 39 60 22 Coil none none none
PANTHER 425 604 180 PTHR31225:SF1 none none none
Gene3D 51 247 197 G3DSA:1.50.30.10 none none IPR001906
PANTHER 1 379 379 PTHR31225:SF1 none none none
SUPERFAMILY 225 375 151 SSF48576 none none IPR008949
SUPERFAMILY 421 562 142 SSF48576 none none IPR008949
Pfam 31 207 177 PF01397 none Terpene synthase, N-terminal domain IPR001906

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting