Protein : Qrob_P0216970.2 Q. robur
Protein Identifier  ? Qrob_P0216970.2 Organism . Name  Quercus robur
Score  25.0 Score Type  egn
Protein Description  (M=1) KOG0260//KOG0307//KOG0674//KOG0675//KOG0916//KOG1830//KOG1984//KOG1985//KOG3671//KOG3753 - RNA polymerase II large subunit [Transcription]. // Vesicle coat complex COPII subunit SEC31 [Intracellular trafficking secretion and vesicular transport]. // Calreticulin [Posttranslational modification protein turnover chaperones]. // Calnexin [Posttranslational modification protein turnover chaperones]. // 1 3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]. // Wiskott Aldrich syndrome proteins [Cytoskeleton]. // Vesicle coat complex COPII subunit SFB3 [Intracellular trafficking secretion and vesicular transport]. // Vesicle coat complex COPII subunit SEC24/subunit SFB2 [Intracellular trafficking secretion and vesicular transport]. // Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms Cytoskeleton]. // Circadian clock protein period [Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1309  
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0 Synonyms

9 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005783 endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
GO:0006457 protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO:0051082 unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_042757 548 1287 + 740 Gaps:69 19.89 1473 64.85 1e-76 DNA topoisomerase 2 isoform 1
blastp_kegg lcl|vvi:100253371 555 1287 + 733 Gaps:83 18.94 1489 65.60 2e-70 DNA topoisomerase 2-like
blastp_kegg lcl|mus:103971503 867 1045 + 179 Gaps:8 42.99 435 67.91 2e-63 calreticulin-3-like
blastp_kegg lcl|gmx:100776652 867 1031 + 165 Gaps:1 39.34 422 81.33 2e-63 calreticulin-3-like
blastp_kegg lcl|gmx:100801827 867 999 + 133 Gaps:1 47.18 284 81.34 2e-62 calreticulin-3-like
blastp_kegg lcl|mdm:103438420 555 1287 + 733 Gaps:40 16.48 1462 63.49 4e-61 DNA topoisomerase 2-like
blastp_kegg lcl|mdm:103409964 555 1287 + 733 Gaps:40 16.79 1435 63.49 7e-61 DNA topoisomerase 2-like
blastp_kegg lcl|pop:POPTR_0001s27120g 555 1287 + 733 Gaps:78 16.23 1485 66.39 2e-60 POPTRDRAFT_706393 DNA topoisomerase family protein
blastp_kegg lcl|pvu:PHAVU_008G052500g 867 999 + 133 Gaps:1 29.39 456 78.36 8e-60 hypothetical protein
blastp_kegg lcl|pmum:103322299 885 1024 + 140 Gaps:2 32.70 422 82.61 8e-60 calreticulin-3
blastp_pdb 3qx3_B 548 1188 + 641 Gaps:8 19.18 803 35.71 2e-16 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 3qx3_A 548 1188 + 641 Gaps:8 19.18 803 35.71 2e-16 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 3rg0_A 894 1010 + 117 Gaps:8 32.83 332 40.37 3e-16 mol:protein length:332 Calreticulin
blastp_pdb 1jhn_A 891 967 + 77 none 18.16 424 41.56 2e-13 mol:protein length:424 calnexin
blastp_pdb 1hhn_A 885 931 + 47 none 46.53 101 59.57 2e-10 mol:protein length:101 CALRETICULIN
blastp_pdb 3l4k_A 505 1174 + 670 Gaps:32 24.17 757 34.97 2e-09 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 3l4j_A 505 1174 + 670 Gaps:32 24.17 757 34.97 2e-09 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 2rgr_A 505 1174 + 670 Gaps:32 24.11 759 34.97 2e-09 mol:protein length:759 DNA topoisomerase 2
blastp_pdb 1bjt_A 505 1174 + 670 Gaps:30 23.08 793 34.97 2e-09 mol:protein length:793 TOPOISOMERASE II
blastp_pdb 1bgw_A 505 1174 + 670 Gaps:30 23.08 793 34.97 2e-09 mol:protein length:793 TOPOISOMERASE
blastp_uniprot_sprot sp|O04153|CALR3_ARATH 867 1030 + 164 Gaps:15 42.22 424 59.78 3e-54 Calreticulin-3 OS Arabidopsis thaliana GN CRT3 PE 2 SV 2
blastp_uniprot_sprot sp|P30182|TOP2_ARATH 548 1250 + 703 Gaps:41 16.50 1473 48.15 2e-38 DNA topoisomerase 2 OS Arabidopsis thaliana GN TOP2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZPP1|CALR_BERST 896 989 + 94 Gaps:1 22.84 416 66.32 3e-34 Calreticulin OS Berberis stolonifera PE 2 SV 1
blastp_uniprot_sprot sp|Q9SL03|CALS2_ARATH 363 551 + 189 Gaps:2 4.21 1950 78.05 1e-32 Callose synthase 2 OS Arabidopsis thaliana GN CALS2 PE 2 SV 3
blastp_uniprot_sprot sp|O81919|CALR_BETVU 896 989 + 94 Gaps:1 22.84 416 63.16 2e-32 Calreticulin OS Beta vulgaris PE 2 SV 1
blastp_uniprot_sprot sp|Q40401|CALR_NICPL 896 983 + 88 none 21.15 416 63.64 2e-32 Calreticulin OS Nicotiana plumbaginifolia GN CAL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9AUE0|CALS1_ARATH 363 550 + 188 Gaps:2 4.21 1950 74.39 7e-32 Callose synthase 1 OS Arabidopsis thaliana GN CALS1 PE 1 SV 2
blastp_uniprot_sprot sp|Q38858|CALR2_ARATH 896 990 + 95 Gaps:1 22.64 424 60.42 2e-31 Calreticulin-2 OS Arabidopsis thaliana GN CRT2 PE 1 SV 3
blastp_uniprot_sprot sp|O24308|TOP2_PEA 550 1286 + 737 Gaps:48 17.65 1462 42.64 2e-31 DNA topoisomerase 2 OS Pisum sativum GN TOP2 PE 2 SV 1
blastp_uniprot_sprot sp|P93508|CALR_RICCO 896 980 + 85 none 20.48 415 67.06 2e-31 Calreticulin OS Ricinus communis PE 2 SV 1

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 858 1168 311 SM00434 none DNA Topoisomerase IV IPR002205
Coils 981 1018 38 Coil none none none
SUPERFAMILY 876 947 72 SSF63887 none none IPR009033
SUPERFAMILY 543 682 140 SSF56719 none none IPR013760
Coils 641 662 22 Coil none none none
SUPERFAMILY 1032 1181 150 SSF56719 none none IPR013760
Gene3D 543 684 142 G3DSA:1.10.268.10 none none IPR013757
Gene3D 1032 1183 152 G3DSA:1.10.268.10 none none IPR013757
Coils 1140 1161 22 Coil none none none
PRINTS 874 896 23 PR00626 none Calreticulin signature IPR001580
PRINTS 945 965 21 PR00626 none Calreticulin signature IPR001580
PRINTS 912 931 20 PR00626 none Calreticulin signature IPR001580
PANTHER 872 1110 239 PTHR11073 none none IPR001580
Pfam 551 671 121 PF00521 none DNA gyrase/topoisomerase IV, subunit A IPR002205
Pfam 1033 1171 139 PF00521 none DNA gyrase/topoisomerase IV, subunit A IPR002205
PANTHER 872 1110 239 PTHR11073:SF6 none none none
Pfam 883 964 82 PF00262 none Calreticulin family IPR001580
Pfam 493 530 38 PF14288 "KEGG:00500+2.4.1.34","MetaCyc:PWY-6773" 1,3-beta-glucan synthase subunit FKS1, domain-1 IPR026899
Pfam 351 423 73 PF14288 "KEGG:00500+2.4.1.34","MetaCyc:PWY-6773" 1,3-beta-glucan synthase subunit FKS1, domain-1 IPR026899
Gene3D 876 952 77 G3DSA:2.10.250.10 none none IPR009033

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting