Protein : Qrob_P0182820.2 Q. robur
Protein Identifier  ? Qrob_P0182820.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K16251 - DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 2031  
Kegg Orthology  K16251
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005507 copper ion binding Interacting selectively and non-covalently with copper (Cu) ions.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0048038 quinone binding Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
GO:0009308 amine metabolic process The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103952138 1 2007 + 2007 Gaps:144 98.32 1960 65.13 0.0 DNA-directed RNA polymerase V subunit 1
blastp_kegg lcl|csv:101225364 1 2030 + 2030 Gaps:183 100.00 1959 64.37 0.0 DNA-directed RNA polymerase E subunit 1-like
blastp_kegg lcl|cmo:103503449 1 2030 + 2030 Gaps:181 99.95 1964 64.34 0.0 DNA-directed RNA polymerase V subunit 1
blastp_kegg lcl|csv:101204362 1 2030 + 2030 Gaps:235 100.00 2019 62.61 0.0 DNA-directed RNA polymerase E subunit 1-like
blastp_kegg lcl|pop:POPTR_0003s19630g 1 2008 + 2008 Gaps:189 99.64 1920 64.40 0.0 POPTRDRAFT_758152 hypothetical protein
blastp_kegg lcl|fve:101298468 1 2010 + 2010 Gaps:178 99.85 1991 62.17 0.0 DNA-directed RNA polymerase E subunit 1-like
blastp_kegg lcl|cic:CICLE_v10004129mg 1 2005 + 2005 Gaps:196 99.46 1867 66.02 0.0 hypothetical protein
blastp_kegg lcl|cit:102606620 1 2005 + 2005 Gaps:192 99.46 1865 66.09 0.0 DNA-directed RNA polymerase V subunit 1-like
blastp_kegg lcl|gmx:100785844 1 2012 + 2012 Gaps:151 99.95 2020 57.80 0.0 DNA-directed RNA polymerase V subunit 1-like
blastp_kegg lcl|gmx:100801412 1 2023 + 2023 Gaps:247 99.42 2082 57.73 0.0 DNA-directed RNA polymerase V subunit 1-like
blastp_pdb 3h0g_M 17 817 + 801 Gaps:98 48.92 1752 25.90 1e-56 mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1
blastp_pdb 3h0g_A 17 817 + 801 Gaps:98 48.92 1752 25.90 1e-56 mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1
blastp_pdb 3s2h_A 17 817 + 801 Gaps:104 49.22 1733 24.50 9e-47 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s2d_A 17 817 + 801 Gaps:104 49.22 1733 24.50 9e-47 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s1r_A 17 817 + 801 Gaps:104 49.22 1733 24.50 9e-47 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s1q_A 17 817 + 801 Gaps:104 49.22 1733 24.50 9e-47 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s1n_A 17 817 + 801 Gaps:104 49.22 1733 24.50 9e-47 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s1m_A 17 817 + 801 Gaps:104 49.22 1733 24.50 9e-47 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s17_A 17 817 + 801 Gaps:104 49.22 1733 24.50 9e-47 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s16_A 17 817 + 801 Gaps:104 49.22 1733 24.50 9e-47 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_uniprot_sprot sp|Q5D869|NRPE1_ARATH 1 2019 + 2019 Gaps:229 95.14 1976 56.06 0.0 DNA-directed RNA polymerase V subunit 1 OS Arabidopsis thaliana GN NRPE1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LQ02|NRPD1_ARATH 37 1988 + 1952 Gaps:175 92.91 1453 29.11 9e-105 DNA-directed RNA polymerase IV subunit 1 OS Arabidopsis thaliana GN NRPD1 PE 1 SV 1
blastp_uniprot_sprot sp|P36594|RPB1_SCHPO 17 817 + 801 Gaps:98 48.92 1752 25.90 4e-56 DNA-directed RNA polymerase II subunit rpb1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpb1 PE 1 SV 1
blastp_uniprot_sprot sp|P24928|RPB1_HUMAN 17 817 + 801 Gaps:123 44.26 1970 25.00 1e-52 DNA-directed RNA polymerase II subunit RPB1 OS Homo sapiens GN POLR2A PE 1 SV 2
blastp_uniprot_sprot sp|P08775|RPB1_MOUSE 17 817 + 801 Gaps:123 44.26 1970 25.00 1e-52 DNA-directed RNA polymerase II subunit RPB1 OS Mus musculus GN Polr2a PE 1 SV 3
blastp_uniprot_sprot sp|P18616|NRPB1_ARATH 9 817 + 809 Gaps:137 47.96 1839 26.19 2e-52 DNA-directed RNA polymerase II subunit 1 OS Arabidopsis thaliana GN NRPB1 PE 1 SV 3
blastp_uniprot_sprot sp|P11512|RPOA1_SULAC 14 817 + 804 Gaps:128 96.14 880 27.78 1e-50 DNA-directed RNA polymerase subunit A' OS Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN rpoA1 PE 3 SV 2
blastp_uniprot_sprot sp|P31813|RPOA1_THECE 13 817 + 805 Gaps:129 95.91 905 25.23 5e-49 DNA-directed RNA polymerase subunit A' OS Thermococcus celer GN rpoA1 PE 3 SV 1
blastp_uniprot_sprot sp|P35074|RPB1_CAEBR 14 817 + 804 Gaps:134 47.06 1853 25.92 3e-48 DNA-directed RNA polymerase II subunit RPB1 OS Caenorhabditis briggsae GN rpb-1 PE 3 SV 2
blastp_uniprot_sprot sp|P04052|RPB1_DROME 13 817 + 805 Gaps:105 46.21 1887 23.28 1e-47 DNA-directed RNA polymerase II subunit RPB1 OS Drosophila melanogaster GN RpII215 PE 3 SV 4

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 480 625 146 PF04983 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 3 IPR007066
PANTHER 8 925 918 PTHR19376:SF36 none none none
Pfam 1891 1967 77 PF11523 none Protein of unknown function (DUF3223) IPR021602
Pfam 324 476 153 PF00623 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 2 IPR000722
PANTHER 8 925 918 PTHR19376 none none none
Pfam 56 280 225 PF04997 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 1 IPR007080
Pfam 754 846 93 PF04998 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 5 IPR007081
SUPERFAMILY 13 1237 1225 SSF64484 none none none
Gene3D 408 479 72 G3DSA:2.40.40.20 none none none
Gene3D 324 351 28 G3DSA:2.40.40.20 none none none
SMART 206 505 300 SM00663 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase I subunit A N-terminus IPR006592
Gene3D 1870 1975 106 G3DSA:3.10.450.40 none none IPR015801

0 Localization

0 Qtllist

0 Targeting