Protein : Qrob_P0155210.2 Q. robur
Protein Identifier  ? Qrob_P0155210.2 Organism . Name  Quercus robur
Score  26.1 Score Type  egn
Protein Description  (M=1) PTHR11538:SF40 - PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT (PTHR11538:SF40) Code Enzyme  EC:6.1.1.20
Gene Prediction Quality  validated Protein length 

Sequence

Length: 389  
Kegg Orthology  K01889
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0 Synonyms

10 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0008033 tRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO:0000287 magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
GO:0000049 tRNA binding Interacting selectively and non-covalently with transfer RNA.
GO:0043039 tRNA aminoacylation The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules.
GO:0004826 phenylalanine-tRNA ligase activity Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe).
GO:0006432 phenylalanyl-tRNA aminoacylation The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa006022mg 2 371 + 370 Gaps:65 86.81 432 74.40 0.0 hypothetical protein
blastp_kegg lcl|fve:101296266 2 371 + 370 Gaps:67 86.74 430 73.99 0.0 phenylalanine--tRNA ligase chloroplastic/mitochondrial-like
blastp_kegg lcl|pmum:103325489 2 371 + 370 Gaps:66 86.84 433 74.47 0.0 phenylalanine--tRNA ligase chloroplastic/mitochondrial
blastp_kegg lcl|mdm:103446008 2 371 + 370 Gaps:66 86.77 431 74.06 0.0 phenylalanine--tRNA ligase chloroplastic/mitochondrial
blastp_kegg lcl|pxb:103932425 2 371 + 370 Gaps:66 86.77 431 73.53 0.0 phenylalanine--tRNA ligase chloroplastic/mitochondrial-like
blastp_kegg lcl|pop:POPTR_0013s10990g 1 371 + 371 Gaps:69 87.32 426 75.00 0.0 phenylalanyl-tRNA synthetase class IIc family protein
blastp_kegg lcl|vvi:100265994 1 371 + 371 Gaps:68 86.89 427 73.58 0.0 phenylalanyl-tRNA synthetase chloroplastic/mitochondrial-like
blastp_kegg lcl|mdm:103409015 2 371 + 370 Gaps:66 86.77 431 72.99 0.0 phenylalanine--tRNA ligase chloroplastic/mitochondrial-like
blastp_kegg lcl|pvu:PHAVU_008G010100g 1 371 + 371 Gaps:66 87.01 431 70.67 0.0 hypothetical protein
blastp_kegg lcl|gmx:100794763 1 371 + 371 Gaps:66 87.01 431 71.73 0.0 phenylalanine--tRNA ligase chloroplastic/mitochondrial-like
blastp_pdb 3tup_A 52 371 + 320 Gaps:51 85.54 415 38.87 2e-71 mol:protein length:415 Phenylalanyl-tRNA synthetase mitochondrial
blastp_pdb 3teg_A 52 371 + 320 Gaps:51 85.54 415 38.87 2e-71 mol:protein length:415 Phenylalanyl-tRNA synthetase mitochondrial
blastp_pdb 3hfv_A 52 371 + 320 Gaps:51 85.54 415 38.87 2e-71 mol:protein length:415 Phenylalanyl-tRNA synthetase mitochondrial
blastp_pdb 3cmq_A 52 371 + 320 Gaps:51 85.54 415 38.87 2e-71 mol:protein length:415 Phenylalanyl-tRNA synthetase mitochondrial
blastp_pdb 3pco_C 135 337 + 203 Gaps:41 52.60 327 36.63 5e-22 mol:protein length:327 Phenylalanyl-tRNA synthetase alpha subunit
blastp_pdb 3pco_A 135 337 + 203 Gaps:41 52.60 327 36.63 5e-22 mol:protein length:327 Phenylalanyl-tRNA synthetase alpha subunit
blastp_pdb 2rhs_C 135 337 + 203 Gaps:53 63.27 294 36.56 9e-22 mol:protein length:294 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 2rhs_A 135 337 + 203 Gaps:53 63.27 294 36.56 9e-22 mol:protein length:294 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 2rhq_A 135 337 + 203 Gaps:53 63.27 294 36.56 9e-22 mol:protein length:294 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 2amc_A 140 337 + 198 Gaps:52 66.92 266 34.27 2e-14 mol:protein length:266 Phenylalanyl-tRNA synthetase alpha chain
blastp_uniprot_sprot sp|Q94K73|SYFM_ARATH 54 371 + 318 Gaps:59 76.69 429 71.43 1e-163 Phenylalanine--tRNA ligase chloroplastic/mitochondrial OS Arabidopsis thaliana GN At3g58140 PE 1 SV 1
blastp_uniprot_sprot sp|Q99M01|SYFM_MOUSE 16 371 + 356 Gaps:60 84.70 451 38.48 2e-71 Phenylalanine--tRNA ligase mitochondrial OS Mus musculus GN Fars2 PE 2 SV 1
blastp_uniprot_sprot sp|O95363|SYFM_HUMAN 52 371 + 320 Gaps:51 78.71 451 38.87 1e-70 Phenylalanine--tRNA ligase mitochondrial OS Homo sapiens GN FARS2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AYQ3|SYFM_RAT 60 371 + 312 Gaps:71 78.18 472 38.21 4e-69 Phenylalanine--tRNA ligase mitochondrial OS Rattus norvegicus GN Fars2 PE 2 SV 1
blastp_uniprot_sprot sp|Q86A68|SYFM_DICDI 71 370 + 300 Gaps:107 79.52 454 39.06 5e-67 Phenylalanine--tRNA ligase mitochondrial OS Dictyostelium discoideum GN mpheS PE 3 SV 1
blastp_uniprot_sprot sp|O16129|SYFM_DROME 83 371 + 289 Gaps:106 77.04 453 38.68 7e-66 Probable phenylalanine--tRNA ligase mitochondrial OS Drosophila melanogaster GN Aats-phe PE 2 SV 3
blastp_uniprot_sprot sp|O74952|SYFM_SCHPO 76 370 + 295 Gaps:56 81.82 429 37.04 4e-59 Phenylalanine--tRNA ligase mitochondrial OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN mfs1 PE 3 SV 1
blastp_uniprot_sprot sp|P08425|SYFM_YEAST 61 370 + 310 Gaps:98 84.43 469 32.07 9e-55 Phenylalanine--tRNA ligase mitochondrial OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN MSF1 PE 1 SV 3
blastp_uniprot_sprot sp|B0VV85|SYFA_ACIBS 133 337 + 205 Gaps:41 52.73 330 40.80 1e-24 Phenylalanine--tRNA ligase alpha subunit OS Acinetobacter baumannii (strain SDF) GN pheS PE 3 SV 1
blastp_uniprot_sprot sp|B0V5Q6|SYFA_ACIBY 133 337 + 205 Gaps:41 52.73 330 40.80 1e-24 Phenylalanine--tRNA ligase alpha subunit OS Acinetobacter baumannii (strain AYE) GN pheS PE 3 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 135 193 59 PF01409 "KEGG:00970+6.1.1.20" tRNA synthetases class II core domain (F) IPR002319
Pfam 243 337 95 PF01409 "KEGG:00970+6.1.1.20" tRNA synthetases class II core domain (F) IPR002319
ProSiteProfiles 169 338 170 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
SUPERFAMILY 334 371 38 SSF54991 "KEGG:00970+6.1.1.20" none IPR005121
Phobius 33 40 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Gene3D 339 371 33 G3DSA:3.30.70.380 "KEGG:00970+6.1.1.20" none IPR005121
Phobius 1 23 23 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 40 40 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 76 226 151 PTHR11538:SF40 none none none
PANTHER 250 371 122 PTHR11538:SF40 none none none
PANTHER 76 226 151 PTHR11538 none none none
PANTHER 250 371 122 PTHR11538 none none none
Gene3D 83 337 255 G3DSA:3.30.930.10 none none none
Pfam 335 371 37 PF03147 "KEGG:00970+6.1.1.20" Ferredoxin-fold anticodon binding domain IPR005121
Phobius 41 388 348 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 130 338 209 SSF55681 none none none
Phobius 24 32 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 40 39

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Mitochondrion 1 0.051 0.906 NON-PLANT 21