Protein : Qrob_P0121270.2 Q. robur
Protein Identifier  ? Qrob_P0121270.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11921:SF8 - FUMARATE REDUCTASE IRON-SULFUR PROTEIN-RELATED Code Enzyme  EC:1.3.5.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 281  
Kegg Orthology  K00235
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0006099 tricarboxylic acid cycle A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
GO:0051536 iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
GO:0051537 2 iron, 2 sulfur cluster binding Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103491745 1 276 + 276 Gaps:3 100.00 277 85.56 5e-176 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2 mitochondrial
blastp_kegg lcl|csv:101220767 1 276 + 276 Gaps:3 100.00 277 85.56 5e-176 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2 mitochondrial-like
blastp_kegg lcl|cam:101492705 1 273 + 273 Gaps:3 98.92 279 83.70 2e-172 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2 mitochondrial-like
blastp_kegg lcl|gmx:100815377 1 273 + 273 Gaps:3 98.92 277 83.21 5e-170 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2 mitochondrial-like
blastp_kegg lcl|tcc:TCM_017067 1 276 + 276 Gaps:11 99.29 283 81.49 4e-169 Succinate dehydrogenase 2-2
blastp_kegg lcl|gmx:100796630 1 273 + 273 Gaps:5 98.92 279 82.61 2e-168 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2 mitochondrial-like
blastp_kegg lcl|pmum:103329740 18 275 + 258 Gaps:2 90.59 287 85.77 2e-165 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2 mitochondrial
blastp_kegg lcl|fve:101292144 1 279 + 279 Gaps:5 98.60 286 79.79 3e-165 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2 mitochondrial-like
blastp_kegg lcl|crb:CARUB_v10005447mg 1 276 + 276 Gaps:4 100.00 280 80.00 5e-165 hypothetical protein
blastp_kegg lcl|ath:AT5G40650 1 276 + 276 Gaps:4 100.00 280 79.64 1e-164 SDH2-2 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2
blastp_pdb 2wqy_O 40 272 + 233 Gaps:2 93.25 252 67.23 2e-116 mol:protein length:252 SUCCINATE DEHYDROGENASE IP SUBUNIT
blastp_pdb 2wqy_B 40 272 + 233 Gaps:2 93.25 252 67.23 2e-116 mol:protein length:252 SUCCINATE DEHYDROGENASE IP SUBUNIT
blastp_pdb 2h89_B 40 272 + 233 Gaps:2 93.25 252 67.23 2e-116 mol:protein length:252 Succinate dehydrogenase Ip subunit
blastp_pdb 2h88_O 40 272 + 233 Gaps:2 93.25 252 67.23 2e-116 mol:protein length:252 Succinate dehydrogenase Ip subunit
blastp_pdb 2h88_B 40 272 + 233 Gaps:2 93.25 252 67.23 2e-116 mol:protein length:252 Succinate dehydrogenase Ip subunit
blastp_pdb 2fbw_O 40 272 + 233 Gaps:2 93.25 252 67.23 2e-116 mol:protein length:252 succinate dehydrogenase Ip subunit
blastp_pdb 2fbw_B 40 272 + 233 Gaps:2 93.25 252 67.23 2e-116 mol:protein length:252 succinate dehydrogenase Ip subunit
blastp_pdb 1yq4_B 40 272 + 233 Gaps:2 93.25 252 67.23 2e-116 mol:protein length:252 succinate dehydrogenase Ip subunit
blastp_pdb 1yq3_B 40 272 + 233 Gaps:2 93.25 252 67.23 2e-116 mol:protein length:252 succinate dehydrogenase Ip subunit
blastp_pdb 3sfe_B 44 272 + 229 Gaps:2 91.67 252 65.80 2e-112 mol:protein length:252 Succinate dehydrogenase [ubiquinone] iron-sul
blastp_uniprot_sprot sp|Q8LB02|DHSB2_ARATH 1 276 + 276 Gaps:4 100.00 280 79.64 5e-166 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2 mitochondrial OS Arabidopsis thaliana GN SDH2-2 PE 1 SV 2
blastp_uniprot_sprot sp|Q8LBZ7|DHSB1_ARATH 1 273 + 273 Gaps:5 99.64 279 76.26 2e-157 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1 mitochondrial OS Arabidopsis thaliana GN SDH2-1 PE 1 SV 2
blastp_uniprot_sprot sp|P21914|DHSB_DROME 1 276 + 276 Gaps:7 94.61 297 61.21 1e-119 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit mitochondrial OS Drosophila melanogaster GN SdhB PE 2 SV 2
blastp_uniprot_sprot sp|Q3B8J8|DHSB_XENLA 44 272 + 229 Gaps:2 81.91 282 67.53 2e-116 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit mitochondrial OS Xenopus laevis GN sdhb PE 2 SV 1
blastp_uniprot_sprot sp|P21911|DHSB_SCHPO 17 276 + 260 Gaps:7 92.73 275 63.92 4e-116 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit mitochondrial OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN sdh2 PE 3 SV 3
blastp_uniprot_sprot sp|Q9YHT2|DHSB_CHICK 6 272 + 267 Gaps:13 93.10 290 62.59 6e-116 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit mitochondrial OS Gallus gallus GN SDHB PE 1 SV 1
blastp_uniprot_sprot sp|A5PL98|DHSB_DANRE 44 275 + 232 Gaps:2 83.57 280 66.67 1e-115 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit mitochondrial OS Danio rerio GN sdhb PE 2 SV 1
blastp_uniprot_sprot sp|Q70KF8|DHSB_UROFA 26 270 + 245 Gaps:5 86.22 283 67.21 3e-115 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit mitochondrial OS Uromyces fabae GN SDH2 PE 3 SV 1
blastp_uniprot_sprot sp|B0BM36|DHSB_XENTR 44 272 + 229 Gaps:2 81.34 284 67.10 6e-115 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit mitochondrial OS Xenopus tropicalis GN sdhb PE 2 SV 1
blastp_uniprot_sprot sp|Q6FWS8|DHSB_CANGA 44 270 + 227 Gaps:3 90.12 253 69.30 1e-114 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit mitochondrial OS Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN SDH2 PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 44 145 102 SSF54292 none none IPR001041
PANTHER 21 270 250 PTHR11921 none none none
Gene3D 146 273 128 G3DSA:1.10.1060.10 none none none
TIGRFAM 49 270 222 TIGR00384 "KEGG:00020+1.3.5.1","KEGG:00190+1.3.5.1","KEGG:00650+1.3.5.1","KEGG:00720+1.3.5.1","MetaCyc:PWY-3781","MetaCyc:PWY-4302","MetaCyc:PWY-561","MetaCyc:PWY-5690","MetaCyc:PWY-6728","MetaCyc:PWY-6969","MetaCyc:PWY-7254","MetaCyc:PWY-7279" dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein IPR004489
ProSiteProfiles 58 136 79 PS51085 none 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. IPR001041
ProSitePatterns 189 200 12 PS00198 none 4Fe-4S ferredoxin-type iron-sulfur binding region signature. IPR017900
ProSiteProfiles 179 209 31 PS51379 none 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. IPR017896
ProSitePatterns 97 105 9 PS00197 none 2Fe-2S ferredoxin-type iron-sulfur binding region signature. IPR006058
SUPERFAMILY 146 272 127 SSF46548 none none IPR009051
Pfam 188 261 74 PF13534 none 4Fe-4S dicluster domain none
Gene3D 38 145 108 G3DSA:3.10.20.30 none none IPR012675
Pfam 46 151 106 PF13085 "KEGG:00020+1.3.5.1","KEGG:00190+1.3.5.1","KEGG:00650+1.3.5.1","KEGG:00720+1.3.5.1","MetaCyc:PWY-3781","MetaCyc:PWY-4302","MetaCyc:PWY-561","MetaCyc:PWY-5690","MetaCyc:PWY-6728","MetaCyc:PWY-6969","MetaCyc:PWY-7254","MetaCyc:PWY-7279" 2Fe-2S iron-sulfur cluster binding domain IPR025192
PANTHER 21 270 250 PTHR11921:SF8 none none none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 24 23

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 40   Mitochondrion 1 0.013 0.955 NON-PLANT 40