Protein : Qrob_P0120350.2 Q. robur
Protein Identifier  ? Qrob_P0120350.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) K02690 - photosystem I P700 chlorophyll a apoprotein A2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 174  
Kegg Orthology  K02690
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0009522 photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0009579 thylakoid A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_2029740 26 173 + 148 none 71.50 207 93.24 4e-94 hypothetical protein
blastp_kegg lcl|atr:s01196p00002960 26 173 + 148 none 33.26 445 95.27 2e-93 AMTR_s01196p00002960 hypothetical protein
blastp_kegg lcl|rcu:RCOM_2119600 26 173 + 148 none 47.13 314 93.24 5e-92 Photosystem I P700 chlorophyll a apoprotein A2 putative
blastp_kegg lcl|rcu:RCOM_0940980 26 173 + 148 none 50.68 292 91.22 2e-91 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_475595 26 173 + 148 none 21.51 688 95.27 2e-90 photosystem I P700 chlorophyll a apoprotein A2
blastp_kegg lcl|gmx:3989267 26 173 + 148 none 20.16 734 95.27 4e-90 psaB GlmaCp012 photosystem I P700 chlorophyll a apoprotein A2
blastp_kegg lcl|aly:ARALYDRAFT_315521 26 173 + 148 none 20.16 734 95.27 4e-90 photosystem I P700 chlorophyll a apoprotein A2
blastp_kegg lcl|ath:ArthCp021 26 173 + 148 none 20.16 734 95.27 4e-90 psaB PSI P700 apoprotein A2
blastp_kegg lcl|sbi:SobiCp021 26 173 + 148 none 20.16 734 95.27 4e-90 psaB photosystem I P700 chlorophyll a apoprotein A2
blastp_kegg lcl|sita:19526780 26 173 + 148 none 20.16 734 95.27 4e-90 psaB W841_p063 photosystem I P700 apoprotein A2
blastp_pdb 2o01_B 5 173 + 169 none 23.09 732 83.43 4e-90 mol:protein length:732 Photosystem I P700 chlorophyll a apoprotein A
blastp_pdb 2wsf_B 5 173 + 169 none 23.02 734 83.43 5e-90 mol:protein length:734 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 2wse_B 5 173 + 169 none 23.02 734 83.43 5e-90 mol:protein length:734 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 2wsc_B 5 173 + 169 none 23.02 734 83.43 5e-90 mol:protein length:734 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 3lw5_B 5 173 + 169 none 23.06 733 83.43 5e-90 mol:protein length:733 Photosystem I P700 chlorophyll a apoprotein A
blastp_pdb 3pcq_B 11 173 + 163 Gaps:5 21.35 740 75.32 1e-73 mol:protein length:740 Photosystem I P700 chlorophyll a apoprotein A
blastp_pdb 1jb0_B 11 173 + 163 Gaps:5 21.35 740 75.32 1e-73 mol:protein length:740 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 3pcq_A 29 173 + 145 Gaps:5 19.87 755 50.00 2e-48 mol:protein length:755 Photosystem I P700 chlorophyll a apoprotein A
blastp_pdb 1jb0_A 29 173 + 145 Gaps:5 19.87 755 50.00 2e-48 mol:protein length:755 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 3lw5_A 29 173 + 145 Gaps:5 20.33 738 48.67 6e-46 mol:protein length:738 Photosystem I P700 chlorophyll a apoprotein A
blastp_uniprot_sprot sp|Q09FW2|PSAB_NANDO 26 173 + 148 none 20.16 734 95.27 1e-91 Photosystem I P700 chlorophyll a apoprotein A2 OS Nandina domestica GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q7YJX3|PSAB_CALFG 26 173 + 148 none 20.16 734 95.27 1e-91 Photosystem I P700 chlorophyll a apoprotein A2 OS Calycanthus floridus var. glaucus GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q9MTN7|PSAB_OENEH 26 173 + 148 none 20.16 734 95.27 1e-91 Photosystem I P700 chlorophyll a apoprotein A2 OS Oenothera elata subsp. hookeri GN psaB PE 3 SV 2
blastp_uniprot_sprot sp|A6MM35|PSAB_BUXMI 26 173 + 148 none 20.16 734 95.27 1e-91 Photosystem I P700 chlorophyll a apoprotein A2 OS Buxus microphylla GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|A4QKJ1|PSAB_CAPBU 26 173 + 148 none 20.16 734 95.27 1e-91 Photosystem I P700 chlorophyll a apoprotein A2 OS Capsella bursa-pastoris GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q49KZ9|PSAB_EUCGG 26 173 + 148 none 20.16 734 95.27 1e-91 Photosystem I P700 chlorophyll a apoprotein A2 OS Eucalyptus globulus subsp. globulus GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|A4QJT2|PSAB_OLIPU 26 173 + 148 none 20.16 734 95.27 1e-91 Photosystem I P700 chlorophyll a apoprotein A2 OS Olimarabidopsis pumila GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|A4QLT2|PSAB_NASOF 26 173 + 148 none 20.16 734 95.27 1e-91 Photosystem I P700 chlorophyll a apoprotein A2 OS Nasturtium officinale GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|A4QKT0|PSAB_CRUWA 26 173 + 148 none 20.16 734 95.27 1e-91 Photosystem I P700 chlorophyll a apoprotein A2 OS Crucihimalaya wallichii GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|A4QKA4|PSAB_BARVE 26 173 + 148 none 20.16 734 95.27 1e-91 Photosystem I P700 chlorophyll a apoprotein A2 OS Barbarea verna GN psaB PE 3 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 42 42 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 22 173 152 SSF81558 "MetaCyc:PWY-101","MetaCyc:PWY-6785" none IPR001280
Pfam 23 173 151 PF00223 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Photosystem I psaA/psaB protein IPR001280
PANTHER 26 60 35 PTHR30128:SF5 none none none
PRINTS 130 152 23 PR00257 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Plant photosystem I psaA and psaB protein signature IPR001280
PRINTS 82 108 27 PR00257 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Plant photosystem I psaA and psaB protein signature IPR001280
PRINTS 43 66 24 PR00257 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Plant photosystem I psaA and psaB protein signature IPR001280
Phobius 152 173 22 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 110 129 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 91 109 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 63 90 28 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 26 60 35 PTHR30128 none none none
PANTHER 112 171 60 PTHR30128 none none none
Phobius 130 151 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 43 62 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 27 173 147 G3DSA:1.20.1130.10 "MetaCyc:PWY-101","MetaCyc:PWY-6785" none IPR001280
PANTHER 112 171 60 PTHR30128:SF5 none none none

3 Localization

Analysis Start End Length
TMHMM 90 109 19
TMHMM 130 152 22
TMHMM 43 65 22

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting