Protein : Qrob_P0096730.2 Q. robur
Protein Identifier  ? Qrob_P0096730.2 Organism . Name  Quercus robur
Score  87.3 Score Type  egn
Protein Description  (M=10) PTHR11945//PTHR11945:SF148 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 83  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100808695 1 60 + 60 none 26.43 227 100.00 3e-33 MADS-box protein SVP-like
blastp_kegg lcl|vvi:100251508 1 60 + 60 none 26.43 227 98.33 5e-33 MADS-box protein SVP-like
blastp_kegg lcl|pxb:103954178 1 60 + 60 none 26.43 227 96.67 6e-33 MADS-box protein JOINTLESS-like
blastp_kegg lcl|mdm:103427462 1 60 + 60 none 25.97 231 96.67 6e-33 MADS-box protein JOINTLESS-like
blastp_kegg lcl|cit:102609601 1 60 + 60 none 27.65 217 96.67 7e-33 MADS-box protein JOINTLESS-like
blastp_kegg lcl|cic:CICLE_v10026457mg 1 60 + 60 none 27.65 217 96.67 8e-33 hypothetical protein
blastp_kegg lcl|sly:101245905 1 60 + 60 none 24.79 242 96.67 1e-32 MADS-box protein JOINTLESS-like
blastp_kegg lcl|pmum:103334394 1 60 + 60 none 26.32 228 95.00 2e-32 MADS-box protein SVP
blastp_kegg lcl|pxb:103937491 1 60 + 60 none 25.97 231 95.00 2e-32 MADS-box protein JOINTLESS
blastp_kegg lcl|pper:PRUPE_ppa011063mg 1 60 + 60 none 26.67 225 95.00 2e-32 hypothetical protein
blastp_pdb 3mu6_D 2 60 + 59 none 83.10 71 61.02 2e-18 mol:protein length:71 Myocyte-specific enhancer factor 2A
blastp_pdb 3mu6_C 2 60 + 59 none 83.10 71 61.02 2e-18 mol:protein length:71 Myocyte-specific enhancer factor 2A
blastp_pdb 3mu6_B 2 60 + 59 none 83.10 71 61.02 2e-18 mol:protein length:71 Myocyte-specific enhancer factor 2A
blastp_pdb 3mu6_A 2 60 + 59 none 83.10 71 61.02 2e-18 mol:protein length:71 Myocyte-specific enhancer factor 2A
blastp_pdb 1tqe_S 1 60 + 60 none 64.52 93 60.00 2e-18 mol:protein length:93 Myocyte-specific enhancer factor 2B
blastp_pdb 1tqe_R 1 60 + 60 none 64.52 93 60.00 2e-18 mol:protein length:93 Myocyte-specific enhancer factor 2B
blastp_pdb 1tqe_Q 1 60 + 60 none 64.52 93 60.00 2e-18 mol:protein length:93 Myocyte-specific enhancer factor 2B
blastp_pdb 1tqe_P 1 60 + 60 none 64.52 93 60.00 2e-18 mol:protein length:93 Myocyte-specific enhancer factor 2B
blastp_pdb 1egw_D 2 60 + 59 none 76.62 77 61.02 2e-18 mol:protein length:77 MADS BOX TRANSCRIPTION ENHANCER FACTOR 2 POL
blastp_pdb 1egw_C 2 60 + 59 none 76.62 77 61.02 2e-18 mol:protein length:77 MADS BOX TRANSCRIPTION ENHANCER FACTOR 2 POL
blastp_uniprot_sprot sp|Q9FUY6|JOIN_SOLLC 1 60 + 60 none 22.64 265 96.67 2e-33 MADS-box protein JOINTLESS OS Solanum lycopersicum GN J PE 1 SV 1
blastp_uniprot_sprot sp|Q9FVC1|SVP_ARATH 1 60 + 60 none 25.00 240 95.00 1e-32 MADS-box protein SVP OS Arabidopsis thaliana GN SVP PE 1 SV 1
blastp_uniprot_sprot sp|O82794|AGL24_ARATH 1 61 + 61 none 27.73 220 90.16 1e-31 MADS-box protein AGL24 OS Arabidopsis thaliana GN AGL24 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XJ66|MAD22_ORYSJ 1 60 + 60 none 26.32 228 80.00 3e-26 MADS-box transcription factor 22 OS Oryza sativa subsp. japonica GN MADS22 PE 2 SV 1
blastp_uniprot_sprot sp|Q5K4R0|MAD47_ORYSJ 3 60 + 58 none 23.58 246 72.41 8e-25 MADS-box transcription factor 47 OS Oryza sativa subsp. japonica GN MADS47 PE 1 SV 2
blastp_uniprot_sprot sp|Q6EP49|MAD27_ORYSJ 1 60 + 60 none 25.00 240 70.00 1e-24 MADS-box transcription factor 27 OS Oryza sativa subsp. japonica GN MADS27 PE 2 SV 2
blastp_uniprot_sprot sp|Q9XGJ4|GGM13_GNEGN 1 60 + 60 none 25.32 237 75.00 2e-24 MADS-box protein GGM13 OS Gnetum gnemon GN GGM13 PE 2 SV 1
blastp_uniprot_sprot sp|Q6VAM4|MAD23_ORYSJ 1 60 + 60 none 37.74 159 70.00 2e-24 MADS-box transcription factor 23 OS Oryza sativa subsp. japonica GN MADS23 PE 2 SV 1
blastp_uniprot_sprot sp|Q38847|AGL15_ARATH 1 60 + 60 none 22.39 268 73.33 5e-24 Agamous-like MADS-box protein AGL15 OS Arabidopsis thaliana GN AGL15 PE 1 SV 1
blastp_uniprot_sprot sp|Q6Z6W2|MAD57_ORYSJ 1 60 + 60 none 24.90 241 68.33 8e-24 MADS-box transcription factor 57 OS Oryza sativa subsp. japonica GN MADS57 PE 2 SV 2

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 3 57 55 PS00350 "Reactome:REACT_21303" MADS-box domain signature. IPR002100
SUPERFAMILY 3 63 61 SSF55455 "Reactome:REACT_21303" none IPR002100
PANTHER 1 60 60 PTHR11945 none none none
PRINTS 38 59 22 PR00404 "Reactome:REACT_21303" MADS domain signature IPR002100
PRINTS 23 38 16 PR00404 "Reactome:REACT_21303" MADS domain signature IPR002100
PRINTS 3 23 21 PR00404 "Reactome:REACT_21303" MADS domain signature IPR002100
ProSiteProfiles 1 61 61 PS50066 "Reactome:REACT_21303" MADS-box domain profile. IPR002100
PANTHER 1 60 60 PTHR11945:SF148 none none none
Pfam 9 59 51 PF00319 "Reactome:REACT_21303" SRF-type transcription factor (DNA-binding and dimerisation domain) IPR002100
SMART 1 60 60 SM00432 "Reactome:REACT_21303" none IPR002100

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting