Protein : Qrob_P0092600.2 Q. robur
Protein Identifier  ? Qrob_P0092600.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PF02392 - Ycf4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 185  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0009522 photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0009579 thylakoid A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:ThcaC_p031 1 184 + 184 none 100.00 184 91.30 2e-119 ycf4 photosystem I assembly protein ycf4
blastp_kegg lcl|pda:8890521 1 184 + 184 none 100.00 184 88.59 9e-114 ycf4 PhdaC_p032 photosystem I assembly protein ycf4
blastp_kegg lcl|fve:10251530 1 184 + 184 none 100.00 184 87.50 8e-112 ycf4 FvH4_C0052 photosystem I assembly protein ycf4
blastp_kegg lcl|pop:Poptr_cp034 1 184 + 184 none 100.00 184 91.30 3e-111 ycf4 photosystem I assembly protein Ycf4
blastp_kegg lcl|pmum:18668042 1 184 + 184 none 100.00 184 91.30 6e-111 ycf4 CP95_p056 photosystem I assembly protein ycf4
blastp_kegg lcl|pper:PrpeC_p032 1 184 + 184 none 100.00 184 91.30 6e-111 ycf4 photosystem I assembly protein ycf4
blastp_kegg lcl|cit:4271216 1 184 + 184 none 100.00 184 86.96 9e-111 ycf4 CisiCp032 photosystem I assembly protein Ycf4
blastp_kegg lcl|rcu:RCOM_ORF00054 1 184 + 184 none 100.00 184 91.85 3e-110 ycf4 photosystem I assembly protein Ycf4
blastp_kegg lcl|sot:4099988 1 184 + 184 none 100.00 184 89.67 7e-110 ycf4 SotuCp032 photosystem I assembly protein Ycf4
blastp_kegg lcl|sly:3950385 1 184 + 184 none 100.00 184 89.67 7e-110 ycf4 LyesC2p058 photosystem I assembly protein ycf4
blastp_uniprot_sprot sp|Q2L913|YCF4_GOSHI 1 184 + 184 none 100.00 184 91.30 7e-121 Photosystem I assembly protein Ycf4 OS Gossypium hirsutum GN ycf4 PE 3 SV 1
blastp_uniprot_sprot sp|A0ZZ46|YCF4_GOSBA 1 184 + 184 none 100.00 184 91.30 7e-121 Photosystem I assembly protein Ycf4 OS Gossypium barbadense GN ycf4 PE 3 SV 1
blastp_uniprot_sprot sp|A0A346|YCF4_COFAR 1 184 + 184 none 100.00 184 89.67 5e-119 Photosystem I assembly protein Ycf4 OS Coffea arabica GN ycf4 PE 3 SV 1
blastp_uniprot_sprot sp|Q49KY7|YCF4_EUCGG 1 184 + 184 none 100.00 184 89.67 4e-118 Photosystem I assembly protein Ycf4 OS Eucalyptus globulus subsp. globulus GN ycf4 PE 3 SV 1
blastp_uniprot_sprot sp|A6MML8|YCF4_DIOEL 1 182 + 182 none 97.85 186 89.56 8e-118 Photosystem I assembly protein Ycf4 OS Dioscorea elephantipes GN ycf4 PE 3 SV 1
blastp_uniprot_sprot sp|Q9M3L5|YCF4_SPIOL 1 184 + 184 none 100.00 184 86.96 3e-117 Photosystem I assembly protein Ycf4 OS Spinacia oleracea GN ycf4 PE 3 SV 1
blastp_uniprot_sprot sp|Q3V524|YCF4_ACOCL 1 184 + 184 none 100.00 184 88.59 4e-117 Photosystem I assembly protein Ycf4 OS Acorus calamus GN ycf4 PE 3 SV 1
blastp_uniprot_sprot sp|Q3BAN1|YCF4_PHAAO 1 184 + 184 none 100.00 184 85.87 4e-116 Photosystem I assembly protein Ycf4 OS Phalaenopsis aphrodite subsp. formosana GN ycf4 PE 3 SV 1
blastp_uniprot_sprot sp|Q9MTL1|YCF4_OENEH 1 184 + 184 none 100.00 184 88.04 9e-116 Photosystem I assembly protein Ycf4 OS Oenothera elata subsp. hookeri GN ycf4 PE 3 SV 2
blastp_uniprot_sprot sp|Q09G35|YCF4_PLAOC 1 184 + 184 none 100.00 184 94.02 2e-115 Photosystem I assembly protein Ycf4 OS Platanus occidentalis GN ycf4 PE 3 SV 1
rpsblast_cdd gnl|CDD|176977 1 184 + 184 none 100.00 184 80.43 1e-100 CHL00036 ycf4 photosystem I assembly protein Ycf4.
rpsblast_cdd gnl|CDD|145503 4 182 + 179 none 99.44 180 64.25 3e-88 pfam02392 Ycf4 Ycf4. This family consists of hypothetical Ycf4 proteins from various chloroplast genomes. It has been suggested that Ycf4 is involved in the assembly and/or stability of the photosystem I complex in chloroplasts.
rpsblast_cdd gnl|CDD|179441 13 182 + 170 none 90.43 188 50.59 5e-61 PRK02542 PRK02542 photosystem I assembly protein Ycf4 Provisional.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 5 182 178 PF02392 none Ycf4 IPR003359
Phobius 89 184 96 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 45 63 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 20 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 21 44 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Hamap 1 184 184 MF_00437 none Photosystem I assembly protein Ycf4 [ycf4]. IPR003359
ProDom 11 181 171 PD003698 none YCF4 ASSEMBLY I PHOTOSYSTEM CHLOROPLAST PLASTID MEMBRANE PHOTOSYNTHESIS TRANSMEMBRANE THYLAKOID IPR003359
Phobius 64 88 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

2 Localization

Analysis Start End Length
TMHMM 21 43 22
TMHMM 58 80 22

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 34   Secretory pathway 4 0.849 0.019 NON-PLANT 34